Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq11 109 1e-18 seq3 87.8 3e-12 >seq11 Length=1061054 Score = 109 bits (120), Expect = 1e-18 Identities = 102/132 (77%), Gaps = 11/132 (8%) Strand=Plus/Minus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| || || ||||||||||||||||| ||||||| |||||||| ||| Sbjct 508637 ATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAA 508578 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 | |||| |||||||||| | ||| | ||| |||| ||||||||||| || ||||| | || Sbjct 508577 AAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTAGCTTTAACAT 508518 Query 81760 TTTCAATCGTAT 81771 ||||||| |||| Sbjct 508517 TTTCAATAGTAT 508506 Score = 109 bits (120), Expect = 1e-18 Identities = 102/132 (77%), Gaps = 11/132 (8%) Strand=Plus/Minus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| || || ||||||||||||||||| ||||||| |||||||| ||| Sbjct 508865 ATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAA 508806 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 | |||| |||||||||| | ||| | ||| |||| ||||||||||| || ||||| | || Sbjct 508805 AAATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTATCTTGAATTTTAGCTTTAACAT 508746 Query 81760 TTTCAATCGTAT 81771 ||||||| |||| Sbjct 508745 TTTCAATAGTAT 508734 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/132 (75%), Gaps = 11/132 (8%) Strand=Plus/Minus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| || || ||||||||||||||||| ||||||| |||||||| ||| Sbjct 509093 ATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAA 509034 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 | |||| ||||||||| | ||| | ||| | || |||||||| || || ||||| | || Sbjct 509033 AAATTAATCTTTGTTGGTCAGGAGGAATTCCCTCTTTATCTTGGATTTTAGCTTTAACAT 508974 Query 81760 TTTCAATCGTAT 81771 ||||||| |||| Sbjct 508973 TTTCAATAGTAT 508962 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/132 (75%), Gaps = 11/132 (8%) Strand=Plus/Minus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| || || || ||||| |||||||| ||||||| |||||||| ||| Sbjct 509321 ATTCTTTTTGAATGTTATAGTCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAA 509262 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 | |||| ||||||||| | ||| | ||| |||| ||||||||||| || ||||| | || Sbjct 509261 AAATTAATCTTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGAATTTTAGCTTTAACAT 509202 Query 81760 TTTCAATCGTAT 81771 ||||||| |||| Sbjct 509201 TTTCAATAGTAT 509190 >seq3 Length=1857262 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/128 (74%), Gaps = 11/128 (9%) Strand=Plus/Plus Query 81653 TCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAAC-----------AAAG 81701 || || || |||||||| ||||||| ||||| | ||||||||| ||| Sbjct 1608553 TCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTCTAACTGTTTTCCAGCAAAA 1608612 Query 81702 ATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATATTT 81761 |||| |||||||||| | ||| | ||| |||| ||||||||||| || ||||| | |||| Sbjct 1608613 ATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTT 1608672 Query 81762 TCAATCGT 81769 ||||| || Sbjct 1608673 TCAATAGT 1608680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903409460933440