Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq11 527 9e-145 seq2 268 1e-66 >seq11 Length=1061054 Score = 527 bits (584), Expect = 9e-145 Identities = 1162/1720 (68%), Gaps = 44/1720 (3%) Strand=Plus/Minus Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 ||||| |||||| | || | || || ||||| | |||||| ||||||| ||||||| Sbjct 552988 TGATCAATGAAAACCCCACGGTCAGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 552929 Query 68575 CAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG---CTCGTATTTTGAATGGAT 68631 |||| ||| ||| | | | ||| | |||| | |||| || ||| ||| | | Sbjct 552928 CAAACAGTTTTATACAATTCTTTTAAATCAGCAGGAATTTCACTAATATATTGTACACTT 552869 Query 68632 CCACCATCGGATAT-AATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAA 68690 ||| | | || |||| | | || || || |||| ||| | ||| || | Sbjct 552868 CCATTGTGAGCAATCAATTGTTGT-TTCATATCTTCATCCCAAAGGCCTCTATCAAAAAG 552810 Query 68691 AACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTA 68750 | || | | | ||| |||||||| | ||||| ||| ||| || | | | || Sbjct 552809 ATCTTTTAATAAATGAGGATTAACAACAAAGAATTCACCACTTAATACACGTCTATAATA 552750 Query 68751 AATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGC 68810 || ||||| ||||||||||| | |||||||||||||||| |||||| | |||||| || Sbjct 552749 GATGTTACTTGTATATGGTTCGAATGATTCATTATTTCCCAAAATTTGTGAAGTTGAAGC 552690 Query 68811 AGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTT 68870 |||||||||||||| | | | | |||||| | ||||| | | ||||| | ||| Sbjct 552689 TGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTTT 552630 Query 68871 TAGATGTTTCCAATCCCAAAGATCAGATGGTACA---ACATTCCAAAGATCGTATTGTAG 68927 || | |||||||||| | | ||| |||||||| | ||| |||||| Sbjct 552629 TAATAAATCCCAATCCCAATATTTATTATCTACTTTTACATTCCACATATCAAATTGTAA 552570 Query 68928 AATTCCGTTACTTGCATATGAT-CCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTA 68986 || || | |||||| | | | || ||||||| |||||| ||||| | || |||| Sbjct 552569 TATCCCTTGACTTGC-TGGGCTACCTTTATATGATTCATATGGTCCATGTATTTGTGCTA 552511 Query 68987 GTTCA-CA-ACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAG 69044 |||| || || | ||||| || | ||||| |||||||| || || | ||||| | Sbjct 552510 ATTCAACAGACATT--TCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTTATTTAA 552453 Query 69045 ATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCC 69104 |||| ||||| | || ||||||| |||||| ||||||| ||||| ||||| Sbjct 552452 TTCTTTAGCTTCATCAGATTCATATGGATATCTTAAAAGCATAAATGTGTCTGCTAATCC 552393 Query 69105 CTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGG 69164 || || || || || ||||||| |||||| |||||||| ||||||||||| ||| || Sbjct 552392 TTGTACTCCTATTCCAATAGGTCGATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTGG 552333 Query 69165 ATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACT-ACTTTAACCACGTCCT 69223 |||||||| | || |||||||||| | ||||| | || | | |||| | || | Sbjct 552332 GTAATAATTTCTTTCAATAATTTTATCTAAATTTC-TAGTAATAATTTTAGTAATATCAT 552274 Query 69224 TTAGTTTGAGAAAATCAAA-----TCGTCCATCTAT-AACAAACATATTCAGTGCTACAG 69277 || ||| ||||||||| | | ||||| |||||| | | ||| | | Sbjct 552273 ATAATTTTTTAAAATCAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATTG 552214 Query 69278 ATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATA 69337 | || | ||||||||| ||||| |||| || || ||||| ||||| || ||||| Sbjct 552213 AAGCCAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATTATTTCACAACATA 552154 Query 69338 GATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCT 69397 |||||||||||| || || || | ||||| |||||| || ||||| || || | Sbjct 552153 AATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATCTT 552094 Query 69398 TGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGA 69457 | || | ||| | || ||||||||| || ||| || | ||||| ||| | Sbjct 552093 TATATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAAT 552034 Query 69458 CCCTAGCATTTATTACGGTCTTGTAAC---GCTTCTCTTTTTCATATTGTGTATATAGCC 69514 | ||| | || || || | | || |||| |||||||| |||||||| Sbjct 552033 CTTGTGCA---AGAACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAATT 551977 Query 69515 GTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATG 69574 ||| ||||| || |||||| ||| || || ||||||||||| |||||||| | || Sbjct 551976 TTTCAAATTCTTCACCCCAAGATTCACTTAACCCTGGACATTCATTAGGACACATTAGTG 551917 Query 69575 ACCACACATC-ATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA 69633 ||| | || || || || |||| ||||||||||| ||| || | ||||| ||| | Sbjct 551916 TCCA-ATTTCTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAA 551858 Query 69634 AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCC 69693 || | |||||| | ||| |||||| || || ||||||| | | ||| | ||| || Sbjct 551857 AATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCA 551798 Query 69694 ATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCT 69753 | ||||||||||||||||||||||| ||||| || | || || ||| ||| Sbjct 551797 AAAATATCAGAATGCCATGGTTCTATATATACAGCAAAAGAACCTTTTCTTTTTCCTCCA 551738 Query 69754 CCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTA 69813 || ||||||| ||||| || || | |||| | ||||| | ||| |||| | |||||| Sbjct 551737 CCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATTT 551678 Query 69814 GATTTACCATTTGTTCCAGAAATATAA-----CT-TCCTCTTGCGCGAATATTACTAATA 69867 ||| ||||||| ||||| ||||||| || ||||||| |||| | | Sbjct 551677 GATATACCATTAGTTCCTCTAATATAAGAATTCTGTCCTCTT------ATATCTTGTACA 551624 Query 69868 GATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATAT 69927 | | ||||| ||||| || ||||| |||| |||||| |||| ||||| ||| || Sbjct 551623 GCAACTCCTATACCTCCCGCGGTTTTACTAATTAAAGCACATTGTTTTAATGTTTCAAAT 551564 Query 69928 ATACCCTCTATGCTATCATCTATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATG 69986 ||||| || || ||| | |||| | ||| ||||| || |||||||| || | Sbjct 551563 ATACCTTCGATAGAATCTGATTTCATAGATAA-TAGAAAGCAAGATGACATTTGTGGACG 551505 Query 69987 TATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAG 70046 | ||||| | ||||||||||||||||| || || ||||| |||| | ||| | | Sbjct 551504 TGGTGTTCCTGAATTAAATAATGTAGGAGTAGCATGTGTGAAATATTTCTGAGACATTAA 551445 Query 70047 ATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCAT 70106 || |||||||| | |||| ||| | ||| ||| ||||| || | || | ||| Sbjct 551444 ATGATATGTTTCTAAAGCTTTTTCAAGATCATCTATATGTATTCCAATTGATACTCTCAT 551385 Query 70107 CAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTC 70166 || | ||| || || ||||| | ||||||| || ||| || | |||||| |||| Sbjct 551384 TAATAAATGTTGTGGACGTTCAATAATTTTATTGTTAATTCGTAATAAATATGATCTTTC 551325 Query 70167 CAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTT 70206 | ||||| || |||||||| | || ||| |||||| Sbjct 551324 TAATGTTTTGAATCCAAAATAATCATAGTTAAAATCTCTT 551285 >seq2 Length=1757347 Score = 268 bits (296), Expect = 1e-66 Identities = 621/923 (67%), Gaps = 31/923 (3%) Strand=Plus/Minus Query 39271 TTAAAAGTCAACATCTAAAGAAAAA--TGATTATCTTCTT-GTGACATAACTCCCATTTT 39327 |||||| ||| || ||||||||| | || | ||||| | | |||||| || || Sbjct 1514594 TTAAAAATCAGTATTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGACTT 1514535 Query 39328 TTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 39387 ||| || || |||| | ||| || || ||||| ||||| |||| || ||||| || Sbjct 1514534 TTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAATC 1514475 Query 39388 CATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAA---TTCTGAAAT 39444 ||| ||| || || || | | || | | ||| | ||||||| |||| ||| Sbjct 1514474 CATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAACATCCTAAACATTCT--AAT 1514417 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 |||||||| ||||||||||| || ||| ||| | |||||||||| || | Sbjct 1514416 -AATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCATTCCAATTAA 1514358 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 | | |||| || || | ||| | |||| | || || || ||| | | ||| Sbjct 1514357 ATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTAT 1514298 Query 39565 CGATGTT--ACTACCTCATCACTCGGTGGATGC---AATAAATGTTTAAACATTAAGCAG 39619 || || || || | || | || |||||| || | ||||| ||| Sbjct 1514297 --ATTTTGAACAACATTTTCTGGTAATTTATTTTCTAATAAAC---TATAAATTAAACAG 1514243 Query 39620 GCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCA 39679 || ||| ||||| |||||||| |||||||||||||| ||| |||||| | ||| Sbjct 1514242 TTAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCA 1514183 Query 39680 GGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATG 39739 | | | | | ||||| | |||||| || ||| |||| |||| ||| || || Sbjct 1514182 TGTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATT 1514123 Query 39740 CCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAAC---TTGTATCATTATGTATC 39796 |||||||| |||| || |||| ||| ||| | || |||||||||| |||| Sbjct 1514122 CCTTCTACACATGCATTAGCTACAATTCTTTCTGCAAAAGAATTTGTATCATT---TATC 1514066 Query 39797 CACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 39856 || || ||||| ||||| || || | | || || |||| ||||||| ||| Sbjct 1514065 CATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAATAGCATGAAAT 1514006 Query 39857 AGAT--AATGTTT-TTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATT 39913 | || ||| ||| || ||| ||||||| ||| |||| ||||| | |||||| || Sbjct 1514005 AAATTTAATCTTTCTTTTTCA---TCTTTAATATAATTATCAATTAATAAACTATATGTT 1513949 Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973 || ||||| || ||||||| || || ||||| ||||| | |||||||| ||||| Sbjct 1513948 TCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATAATT 1513889 Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033 | ||| ||| ||||| | ||||||||||| || ||||||||||| || ||| Sbjct 1513888 TCTACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACAATTCCATCACTTGCTGCA 1513829 Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCA 40093 |||||||| || |||||||| ||||||| |||||||| | | ||||| | | || Sbjct 1513828 AAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTAATTTTTCAAAATCT 1513769 Query 40094 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTG 40153 || | ||| | |||| ||| | |||||||||||||||||| || || || || |||||| Sbjct 1513768 TTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTTTG 1513709 Query 40154 TACATGTTCCATATATCACGATA 40176 || | ||||| | ||| |||| Sbjct 1513708 TAAAAATTCCAAACTTCAGGATA 1513686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686907477700560