Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq11 134 1e-26 seq3 116 3e-21 >seq11 Length=1061054 Score = 134 bits (148), Expect = 1e-26 Identities = 680/1067 (64%), Gaps = 34/1067 (3%) Strand=Plus/Minus Query 130732 AAGATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAAC 130791 ||||||||||| |||||| ||||| | || |||||| | || |||||| Sbjct 552812 AAGATCTTTTAATAAATGAGGATTAACAACAAAGAATTCACCACTTAATACACGTCTATA 552753 Query 130792 GTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGT 130851 || ||||| || || | ||||| || ||||| || || || || ||||||| || | Sbjct 552752 ATAGATGTTACTTGTATATGGTTCGAATGATTCATTATTTCCCAAAATTTGTGAAGTTGA 552693 Query 130852 TGCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCG 130911 || || ||||| ||| | | |||||||| | | || ||| | | |||||| Sbjct 552692 AGCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTT 552633 Query 130912 CTTCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTG---TTCCACATATCAAA 130968 || ||| |||||||||||| | | || | || || |||||||||||||| Sbjct 552632 TTTTAATAAATCCCAATCCCA---ATATTTATTATCTACTTTTACATTCCACATATCAAA 552576 Query 130969 TTGTAGTATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTAGATTCCTTCGACACG 131028 ||||| ||| |||| ||| || || || || | ||||| || ||| | | | Sbjct 552575 TTGTAATATCCCTTGACTTGCTGGGCTACCTTTATATGATTCATATGGTCCATGTATTTG 552516 Query 131029 AGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATT 131088 || | || ||| |||||| | ||||| || ||||| ||| |||||| Sbjct 552515 TGCTAATTCAACAGACATTTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTTATT 552456 Query 131089 TAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAG 131148 ||||| ||| |||| | || || ||| || | | | ||||| | |||||| | Sbjct 552455 TAATTCTTTAGCTTCATCAGATTCATATGGATATCTTAAAAGCATAAATGTGTCTGCTAA 552396 Query 131149 ACCCTGTATCCCAACGCCCACCGGTCTATGTTTTAAATTACATTTACGCGAACATTCGGT 131208 || |||| || | || | |||| |||| || ||| |||| | || | Sbjct 552395 TCCTTGTACTCCTATTCCAATAGGTCGATGTCTTTTATTTGATTTTTCAGCTTCTTTAAT 552336 Query 131209 GGGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCT 131268 || ||| || | ||||| ||||| | |||||| | | ||||| || | Sbjct 552335 TGGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATC 552276 Query 131269 TTTCAATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATT-GATTTACACATA 131327 | ||||| | |||||||| |||| | ||||||| | | | || | Sbjct 552275 ATATAATTTTTTAAAATCAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCA-A 552217 Query 131328 TTGACGCCAGATTACAAACTGCCGTTTCGTCA--TAATCGCAATACTGAACAATTTCGGC 131385 |||| |||| ||||||||| || ||| ||| | || ||| | || ||||| Sbjct 552216 TTGAAGCCAAATTACAAACAGCTACTTCATCAGGTGATGT--ATATTCAATTATTTCACA 552159 Query 131386 GCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATG 131445 || |||||||| | || || || || ||||||| |||||| ||||| ||| ||||| Sbjct 552158 ACATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATT-ACATG 552100 Query 131446 G-TCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATCGAA 131504 || || || | ||| || || || ||||| | |||| ||| | ||| | | || Sbjct 552099 CATCTTTATATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAAT--AGCAAA 552042 Query 131505 --AGAGTTTTCGAGCAG--ACAATTGATATTTGTA--TTGGCCGCGTTTTTCGTAATTTT 131558 | | | | | ||| ||| || | || || || | || ||| || ||| Sbjct 552041 CCATAAATCTTGTGCAAGAACAGTTTTTTTTCCTAAATTTTC----TTCTTCATATTTTG 551986 Query 131559 CGTACAACGTTTCAAAGTTTTGGCCAAACGA---ACTGTCCAAATTGGGACATTCGCTGG 131615 || || ||||||| | || || | || ||| || |||||||| | | Sbjct 551985 TATATAATTTTTCAAATTCTTCACCCCAAGATTCACTT---AACCCTGGACATTCATTAG 551929 Query 131616 GACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCC 131675 |||||||||| | ||| | || | || |||| |||||||| ||||| || |||| Sbjct 551928 GACACATTAGTGTCCAATTTCTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCC 551869 Query 131676 ATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttt-tCAAA 131734 | | || || || | |||||||||| || |||||| || |||| ||||||| | ||| Sbjct 551868 AAATAGCATAAAATAAATCTCTAGCTCTTAATTCTTCTTTA-CCATGATTTTTTCTTAAA 551810 Query 131735 TTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 | |||||| || ||||| || | |||||| ||||| | ||| || || Sbjct 551809 TCTAAAAATTCAAAAATATCAGAATGCCATGGTTCTATATATACAGC 551763 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTC 27094 || || |||||||| || || |||||||||||||| || || | | |||| | | || Sbjct 509112 AAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTAC-CATC 509054 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| | ||||| || || |||| | | ||||| || || || | ||||||||||| Sbjct 509053 TTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCCTCTTTATC 508994 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 ||| || ||| | |||| | ||| || | | ||| || || |||||||| | Sbjct 508993 TTGGATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGT 508934 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 ||| || || | ||||| ||||| || |||||| || || Sbjct 508933 TTTTCCAGTTAATGTTTTTACAAAAATCTGCATACCTCCT 508894 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTC 27094 || || |||||||| || || |||||||||||||| || || | | |||| | | || Sbjct 508884 AAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGTT-CTACCATC 508826 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| | ||||| || || |||| | | |||||||| || || | || |||||||| Sbjct 508825 TTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTATC 508766 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 || || ||| | |||| | ||| || | | ||| || || |||||||| | Sbjct 508765 TTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGT 508706 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 ||| || || | ||||| ||||| || |||||| || || Sbjct 508705 TTTTCCAGTTAATGTTTTTACAAAAATCTGCATACCTCCT 508666 >seq3 Length=1857262 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTT 27096 |||||||||||| || || |||||||||||||| ||||| | | ||||| || | |||| Sbjct 1608534 TACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGC-CATCTT 1608592 Query 27097 CGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGG 27156 | | |||||| || || |||| | | |||||||| || || | || |||||||| Sbjct 1608593 CTAACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTT 1608652 Query 27157 CGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATT 27216 || || ||| | |||| | |||||| | | |||||| || ||||| || | || Sbjct 1608653 GAATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTT 1608712 Query 27217 TGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || | ||||| |||||||||||||| Sbjct 1608713 TTCCGGTTAATGTTTTTACAAAGATTTGCAT 1608743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424933602451248