Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq11 152 6e-32 >seq11 Length=1061054 Score = 152 bits (168), Expect = 6e-32 Identities = 714/1127 (63%), Gaps = 10/1127 (1%) Strand=Plus/Plus Query 104480 CATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATT 104539 || ||| | |||| | || ||| |||| | || || |||||| |||| ||||| | Sbjct 551628 CAAGATATAAGAGGACAGAATTCTTATATTAGAGGAACTAATGGTATATCAAATGGTTTA 551687 Query 104540 ATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGTC-- 104597 |||||||| | | || ||||| | ||||| | |||||| |||||| ||| | Sbjct 551688 GTTCCAATGTTAAGAGTTTTTAATGATACAGCTAGATATGTAGATCAAGGTGGAGGAAAA 551747 Query 104598 -GAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTT 104656 |||| || ||| | || || ||| | || |||||||| | ||||| | || || | Sbjct 551748 AGAAAAGGTTCTTTTGCTGTATATATAGAACCATGGCATTCTGATATTTTTGAATTTTTA 551807 Query 104657 GAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTC 104716 || || | || || ||| | || || | | ||| | || | ||| | Sbjct 551808 GATTTAAGAAAAAATCATGGTAAAGAAGAATTAAGAGCTAGAGATTTATTTTATGCTATT 551867 Query 104717 TGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGT 104776 ||| | || ||| | || ||||| ||||| | || | | | |||||| | || | ||| Sbjct 551868 TGGGTACCTGATTTATTTATGAAAAGAGTAAAAGAAAATAGAAATTGGACACTAATGTGT 551927 Query 104777 CCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACA 104836 || | | || || | || | |||||| || |||||| | || ||| Sbjct 551928 CCTAATGAATGTCCAGGGTTAAGTGAATCTTGGGGTGAAGAATTTGAAAAATTATATACA 551987 Query 104837 AAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCT 104896 || || || |||||| | | | || || | || ||| | ||| ||| Sbjct 551988 AAATATGAAGAAGAAAATTTAGGAAAAAAAACTGTTCTTGCACAAGATTTATGGTTTGCT 552047 Query 104897 ATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAAC 104956 ||| | | ||||| || |||||| |||||| ||| | || ||||| || ||||| Sbjct 552048 ATTTTACAAAGTCAAATAGAAACTGGTGTACCATATATGTTATATAAAGATGCATGTAAT 552107 Query 104957 CAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATC 105016 || ||||||||| ||||| || || || || ||| | ||| ||||| Sbjct 552108 TCTAAATCTAATCAAAAAAATTTAGGAACAATTAAATGTAGTAATTTATGTTGTGAAATA 552167 Query 105017 TTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCC 105076 | |||| |||| ||||| ||||| ||||| | || ||||| || | | Sbjct 552168 ATTGAATATACATCACCTGATGAAGTAGCTGTTTGTAATTTGGCTTCAATTGCATTATGC 552227 Query 105077 AAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAA 105136 || | ||| ||| ||| | ||| |||||||| | ||||| | | || |||| ||| Sbjct 552228 AAATTTGTTGATAGAGAAAAAAAAGAATTTGATTTTAAAAAATTATATGATATTACTAAA 552287 Query 105137 ACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCT 105196 | | | || | ||| || | | | ||||||| ||||||| |||||| || | ||| Sbjct 552288 ATTATTACTAGAAATTTAGATAAAATTATTGAAAGAAATTATTACCCAATTAAAGAAGCT 552347 Query 105197 CGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTA 105256 ||||| |||| ||||| || || ||||| | || || || || | || || | Sbjct 552348 GAAAAATCAAATAAAAGACATCGACCTATTGGAATAGGAGTACAAGGATTAGCAGACACA 552407 Query 105257 TTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATA 105316 || || |||| | | ||| ||| || || ||||| || ||| | ||| | ||| Sbjct 552408 TTTATGCTTTTAAGATATCCATATGAATCTGATGAAGCTAAAGAATTAAATAAAAGAATA 552467 Query 105317 TTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGT 105376 ||||| || |||||| | || ||| | || | | || || ||| | | |||| Sbjct 552468 TTTGAAACAATGTATTATGCAGCTTTAGAAATGTCTGTTGAATTAGCACAAATACATGGA 552527 Query 105377 CCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGG 105436 ||||||||| | | | | ||| ||||| |||||| | | ||||||||||||| | Sbjct 552528 CCATATGAATCATATAAAGGTAGCCCAGCAAGTCAAGGGATATTACAATTTGATATGT-G 552586 Query 105437 GAAGGTGAGACCA-AGCTTCACTA---CGACTGGGAAGCTCTCAAGGAACGCATCAAGGA 105492 ||| || | | | | | | || || |||| | | | || || | ||| | Sbjct 552587 GAATGTAAAAGTAGATAATAAATATTGGGATTGGG-ATTTATTAAAAAAAAAAATAAGTA 552645 Query 105493 -GAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAA 105551 | | || | | || ||| || | || || ||||||||||| || || |||||| Sbjct 552646 TGCATGGATTAAGAAATTCTCTTCTTTTAGCACCTATGCCAACAGCTTCAACTTCACAAA 552705 Query 105552 TCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTAT 105598 | ||||| |||||||||| || ||||| || || | ||||||||| Sbjct 552706 TTTTGGGAAATAATGAATCATTCGAACCATATACAAGTAACATCTAT 552752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259677222960