Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq11 143 3e-29 seq3 131 2e-25 >seq11 Length=1061054 Score = 143 bits (158), Expect = 3e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || | || || |||||||| |||||||| || || || Sbjct 509129 ATGCAGATTTTTGTAAAAACATTAACTGGAAAGACTATAACTCTTGATGTAGAACCATCC 509188 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || ||||||||||| || || || ||||||||||| ||||| Sbjct 509189 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATTCCTCCTGACCAA 509248 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | ||||||||||||| || ||| | || |||| | | || ||| | |||||||| Sbjct 509249 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGACTATAAC 509308 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 | ||||| ||||| || | |||||||| || Sbjct 509309 ATTCAAAAAGAATCAACCTTACATCTAGTTTT 509340 Score = 134 bits (148), Expect = 2e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || | || || || || || |||||||| || || || Sbjct 508901 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 508960 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || |||||||| || || || |||||||||||||| ||||| Sbjct 508961 GATACTATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAGGGAATTCCTCCTGACCAA 509020 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | ||||||||||||| || ||| | || |||| | | || ||| | || |||||| Sbjct 509021 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAAT 509080 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 | ||||| ||||| ||| | ||| |||| || Sbjct 509081 ATTCAAAAAGAATCAACTTTACATTTAGTTTT 509112 Score = 131 bits (144), Expect = 2e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 || || ||||| |||||||| || ||| || ||||| |||| |||| | || |||||| Sbjct 508472 GGAAAAACTATAACTCTTGATGTAGAGCCATCTGATACTATTGAAAATGTTAAAGCTAAA 508531 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 ||||| || || || ||||||||||| || || || | ||||||||||||| || ||| Sbjct 508532 ATTCAAGATAAAGAAGGAATTCCTCCTGATCAACAAAGATTAATTTTTGCTGGGAAACAA 508591 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 | || |||| | | || ||| | || |||||| | ||||| ||||| ||| | ||| || Sbjct 508592 TTAGAAGATGGTAGAACACTATCTGATTATAATATTCAAAAAGAATCAACTTTACATTTA 508651 Query 27613 GTCTT 27617 || || Sbjct 508652 GTTTT 508656 Score = 125 bits (138), Expect = 8e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || | || || || || || |||||||| || || || Sbjct 508673 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 508732 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || ||||||||||| || || || ||||| ||||| || || Sbjct 508733 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATCCCTCCTGATCAA 508792 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | ||||||||||||| || ||| | || |||| | | || ||| | || |||||| Sbjct 508793 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAAT 508852 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 | ||||| ||||| ||| | ||| |||| || Sbjct 508853 ATTCAAAAAGAATCAACTTTACATTTAGTTTT 508884 >seq3 Length=1857262 Score = 131 bits (144), Expect = 2e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 27398 TTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTG 27457 |||| | ||||||||||||||| || || | ||||| || || || |||||||| |||| Sbjct 1608751 TTACGAAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTG 1608692 Query 27458 AGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTC 27517 | || ||| | |||| |||| | || ||||||||||| || || || |||||||||| Sbjct 1608691 AACCATCTGACACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATTCCTC 1608632 Query 27518 CAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAG 27577 | || || || | ||||||||||||| || || | || |||| | || || | | Sbjct 1608631 CTGATCAACAAAGATTAATTTTTGCTGGAAAACAGTTAGAAGATGGCAGAACATTATCTG 1608572 Query 27578 ACTATAATGTCCAAAAGGAATCCAC 27602 |||||||| | ||||| || || || Sbjct 1608571 ACTATAATATTCAAAAAGAGTCAAC 1608547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309302152480