Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq5 107 2e-18 >seq5 Length=2795668 Score = 107 bits (118), Expect = 2e-18 Identities = 274/407 (67%), Gaps = 19/407 (5%) Strand=Plus/Minus Query 136368 AAACTGGCAACATCAGGAAAGGGAATACTTGCTGTTGATGAATCTACAAATACTTGTGGG 136427 ||||| | | || ||||||||||||| | |||| |||||||| ||| | || | | Sbjct 540420 AAACTTGTAGCAGCAGGAAAGGGAATTTTAGCTGCAGATGAATCAACACAAACAATTAAG 540361 Query 136428 AAAAGATTGGCTAGTATTGGAGTAGAAAATACAGAGGCAAATAGA-CAGGCATACAGAGG 136486 |||||||| | || ||| | | || ||||| | | ||||||| | || || |||| Sbjct 540360 AAAAGATTTGATAATATAAAAATCGAGAATACTGTTGAAAATAGAGCTAGC-TATAGAGA 540302 Query 136487 TATGTTATTTACCACAGAGGGATTAGGTAATTATATTAGTGGTGCTATCTTATTTGAAGA 136546 | | |||||| || | |||||||| || | ||| ||||| || ||||||||||| Sbjct 540301 TTTATTATTTGGAACTAAAGGATTAGGAAAATTCATTTCAGGTGCAATTTTATTTGAAGA 540242 Query 136547 AACACTATTTCAAGATCATGCTGATGGAGAAAGCATGATTGCAAA---GTTAGAGAAGCA 136603 ||| |||||||| | ||| | ||| | | ||| | | ||| ||| | | | Sbjct 540241 AACTTTATTTCAAAAAAATGAAGCTGGTG-TACCAT--TAGTAAATTTATTACATGATGA 540185 Query 136604 AGGAATTATACCAGGTATCAAGGTAGATAAAGGATTAAAACCATTAGT---TGGTGCATT 136660 ||| || |||||||| || || || || ||||| ||| ||||| || | | Sbjct 540184 AGGTATAATACCAGGAATTAAAGTTGACAAAGGTTTA-----GTTAGTATCCCATGTACT 540130 Query 136661 AGAGCATGAGACATATTGTTCTGGATTAGATGGTCTAACAGAAA-GAGCAAGTGACTATT 136719 || |||| | || || |||||||| || |||||| | |||| || |||| Sbjct 540129 -GATGATGAAAAATCAACCCAAGGTTTAGATGGATTAGCAGAAAGGTGCAA-AGAATATT 540072 Query 136720 ATGGTAGAGGTGCAAGATTTGCTAAGTGGAGAGCAGTTCTACAAATT 136766 || |||||||||||||| || |||||||||||| || |||| Sbjct 540071 ATAAAGCTGGTGCAAGATTTGCAAAATGGAGAGCAGTTTTAGTAATT 540025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631425984502640