Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq11 138 8e-28 seq3 125 5e-24 >seq11 Length=1061054 Score = 138 bits (152), Expect = 8e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| | || |||||||| || ||||| || || || | | Sbjct 508673 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 508732 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| ||| |||| ||||| | |||||| || |||||||| | || || ||||| Sbjct 508733 GATACTATTGAAAATGTTAAAGC-TAAAATTCAAGATAAAGAAGGAATCCCTCCTGATCA 508791 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||| ||||| || |||||| | ||||| | | || || ||||| || Sbjct 508792 ACAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAA 508851 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| || || ||||||||||||||||| || ||||||| Sbjct 508852 TATTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGG 508899 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| | || |||||||| || ||||| || || || | | Sbjct 508901 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 508960 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| ||| |||| ||||| | ||||| || ||||| || | || || || || Sbjct 508961 GATACTATTGAAAATGTTAAAGC-TAAAATCCAAGATAAAGAGGGAATTCCTCCTGACCA 509019 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||| ||||| || |||||| | ||||| | | || || ||||| || Sbjct 509020 ACAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAA 509079 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| || || ||||||||||||||||| || ||||||| Sbjct 509080 TATTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGG 509127 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| | || ||||| || || ||||| || || || | | Sbjct 509129 ATGCAGATTTTTGTAAAAACATTAACTGGAAAGACTATAACTCTTGATGTAGAACCATCC 509188 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| ||| |||| ||||| | |||||| || |||||||| | || || || || Sbjct 509189 GATACTATTGAAAATGTTAAAGC-TAAAATTCAAGATAAAGAAGGAATTCCTCCTGACCA 509247 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||| ||||| || |||||| | ||||| | | || || || || || Sbjct 509248 ACAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGACTATAA 509307 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| |||||||| || || |||||| |||||||||| || ||||||| Sbjct 509308 CATTCAAAAAGAATCAACCTTACATCTAGTTTTAAGATTAAGAGGAGG 509355 Score = 116 bits (128), Expect = 3e-21 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23638 GGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAA-TATTAAAACAAAA 23696 |||||||| || ||||| || || || | | || ||| |||||| | ||||| | ||| Sbjct 508472 GGAAAAACTATAACTCTTGATGTAGAGCCATCTGATACTATTGAAAATGTTAAAGCTAAA 508531 Query 23697 AATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACA 23756 | || || |||||||| | || || |||||||| | ||||| ||||| || ||||| Sbjct 508532 A-TTCAAGATAAAGAAGGAATTCCTCCTGATCAACAAAGATTAATTTTTGCTGGGAAACA 508590 Query 23757 ACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTT 23816 | | ||||| | | || || ||||| || || |||||||| || || |||||||| Sbjct 508591 ATTAGAAGATGGTAGAACACTATCTGATTATAATATTCAAAAAGAATCAACTTTACATTT 508650 Query 23817 AGTTTTAAGGTTGCGAGGAGG 23837 ||||||||| || ||||||| Sbjct 508651 AGTTTTAAGATTAAGAGGAGG 508671 >seq3 Length=1857262 Score = 125 bits (138), Expect = 5e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || || || ||||| | || |||||||| |||||||| || ||||| | Sbjct 1608746 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCA 1608687 Query 23668 ACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | |||||| |||||| | ||||| | |||| || || |||||||| | || || || Sbjct 1608686 TCTGACACTATTGAAAATGTTAAAGCTAAAA-TTCAAGATAAAGAAGGAATTCCTCCTGA 1608628 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| | ||||| ||||| || ||||| | ||||| | | || ||| || || Sbjct 1608627 TCAACAAAGATTAATTTTTGCTGGAAAACAGTTAGAAGATGGCAGAACATTATCTGACTA 1608568 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGT 23819 || || ||||||||||| || |||||||| || Sbjct 1608567 TAATATTCAAAAAGAGTCAACCTTACATTTGGT 1608535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008965598232