Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq11 113 1e-19 seq153 84.2 5e-11 >seq11 Length=1061054 Score = 113 bits (124), Expect = 1e-19 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| ||||||||||| | ||| ||||| | | ||||| |||||||||| || ||||| Sbjct 509098 AGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCC 509039 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-T 225634 ||| || || | || ||||||||| || ||||| || || || |||||||| ||| || | Sbjct 509038 AGCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCCTCTTTATCTTGGAT-TTTAGCTT 508980 Query 225635 TCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAG 225694 | ||| ||| || || || || | ||| || || | || || || || || || || | Sbjct 508979 TAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTTTTTCCAGTTAATG 508920 Query 225695 TTTTTATGAACACTTGCAT 225713 |||||| || | ||||| Sbjct 508919 TTTTTACAAAAATCTGCAT 508901 Score = 107 bits (118), Expect = 5e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | || || || | | ||||| |||||||||| || |||||| Sbjct 509325 GTTGATTCTTTTTGAATGTTATAGTCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCA 509266 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 || || || | || ||||||||| || ||||| ||||| || ||||| || ||| || || Sbjct 509265 GCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGAAT-TTTAGCTTT 509207 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||| || || || || | ||| || || | || || ||||| || || || || Sbjct 509206 AACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATAGTCTTTCCAGTTAATGT 509147 Query 225696 TTTTATGAACACTTGCAT 225713 ||||| || | ||||| Sbjct 509146 TTTTACAAAAATCTGCAT 509129 Score = 104 bits (114), Expect = 6e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| ||||||||||| | ||| ||||| | | ||||| |||||||||| || ||||| Sbjct 508870 AGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCC 508811 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-T 225634 ||| || || | || |||||| || || || || ||||| || ||||| || ||| || | Sbjct 508810 AGCAAAAATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTATCTTGAAT-TTTAGCTT 508752 Query 225635 TCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAG 225694 | ||| ||| || || || || | ||| || || | || || || || || || || | Sbjct 508751 TAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTTTTTCCAGTTAATG 508692 Query 225695 TTTTTATGAACACTTGCAT 225713 |||||| || | ||||| Sbjct 508691 TTTTTACAAAAATCTGCAT 508673 Score = 91.5 bits (100), Expect = 4e-13 Identities = 93/120 (78%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| ||||||||||| | ||| ||||| | | ||||| |||||||||| || ||||| Sbjct 508642 AGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCC 508583 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 ||| || || | || |||||| || || ||||| ||||| || ||||| || ||| |||| Sbjct 508582 AGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAAT-TTTAGCTT 508524 >seq153 Length=5957 Score = 84.2 bits (92), Expect = 5e-11 Identities = 84/108 (78%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| |||||||||||||| ||||||||||||||||| | ||||| || ||| | Sbjct 2791 ATACTTCTGGATGACCAAAAAACCAGAATAAATGTTGATATAATATAGGGTCTCCTGCAA 2732 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 | |||||||||||| |||||||||| | ||| | ||| |||| Sbjct 2731 AAGTTGGATCAAAAAATAATGTATTAAAATGTAAATCTGATAATAACA 2684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192528846986876