Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2 206 2e-48 >seq2 Length=1757347 Score = 206 bits (228), Expect = 2e-48 Identities = 590/897 (66%), Gaps = 15/897 (2%) Strand=Plus/Minus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 |||||| | ||||| || || | |||| ||||| |||||||| ||||| |||| ||| Sbjct 1514546 AACACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAA 1514487 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG 4366 || || ||||| ||| || || || | | | || ||| ||| || Sbjct 1514486 AGATATTAAATCCATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAACATCCTAA 1514427 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 | | | | |||| ||||| |||||||| ||||| || |||||| | || || Sbjct 1514426 ACATTCTAATAATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCAT 1514367 Query 4427 TCCAATTAATCTCACA-GGTAGCGCGTATGTCAAAAACTCTTGTTCTAT--AGTT--ACG 4481 ||||||||| ||||| |||| | || ||| ||| || ||| | | || || Sbjct 1514366 TCCAATTAAA-TCACAAGGTAAAG---AT-TCACAAATAAATGATCTTTCTACTTCAACT 1514312 Query 4482 GCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAAC 4541 |||||| | | ||||| || | || || | | ||||||| |||| | | | | Sbjct 1514311 GCTTCTTTAACTATATTTTGAACAACATTTTCTGGTAATTTATTTTCTAATAAACTATAA 1514252 Query 4542 AATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAAC 4601 | |||||| ||||||| ||| ||||| || || || ||||| | ||| ||| ||| Sbjct 1514251 ATTAAACAGTTAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAAAT 1514192 Query 4602 GTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAA 4661 ||||| || | | | | | ||||||| |||||| || || ||| ||| | Sbjct 1514191 GTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTA 1514132 Query 4662 AAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG 4721 || ||||| |||||||| ||| ||||| | || | || || | | | Sbjct 1514131 AATAATATTCCTTCTACACATGCATTAGCTACAATTCTTTCTGCAAAAGAATTTG---TA 1514075 Query 4722 TCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATA 4781 || || |||||||| ||||| ||||| || || | || || | | ||| Sbjct 1514074 TCATTTATCCATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAATA 1514015 Query 4782 GCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTA 4841 || | |||||| || | |||| | |||| ||||||| | || |||| || ||| Sbjct 1514014 GCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTA 1513955 Query 4842 TACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCT 4901 || ||||||||||||||||||| | ||| || ||||| ||||| | | ||||| Sbjct 1513954 TATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCA 1513895 Query 4902 GTTACTTGAACTTCGTTACAAAATCTTTCTA-CTAAGTTTTCGTTTACTATACCGTCACT 4960 | | || ||||| | ||||| || ||| | || ||||| ||| || || ||||| Sbjct 1513894 ATAATTTCTACTTCTCTTAAAAAT-TTACTAGCCAAATTTTCTAATACAATTCCATCACT 1513836 Query 4961 GGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTT 5020 ||||||||||| || |||||||| |||||| | | ||| | || | ||||| Sbjct 1513835 TGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTAATTTTTC 1513776 Query 5021 CCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 | | |||||| | | |||||||| ||||||| | |||||||| || ||||| || Sbjct 1513775 AAAATCTTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGC 1513716 Query 5081 TTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTT 5137 ||||||||| | | ||||| ||||||||| ||| ||| | | ||||||||| Sbjct 1513715 TTTTTTGTAAAAATTCCAAACTTCAGGATACATAATAGGATGCAATGTAAATCTGTT 1513659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427048798481282