Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq11 571 8e-158 seq2 230 3e-55 >seq11 Length=1061054 Score = 571 bits (632), Expect = 8e-158 Identities = 1168/1717 (68%), Gaps = 38/1717 (2%) Strand=Plus/Minus Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 ||||| |||||| | || | ||||| ||||| | ||||| ||||||| ||||||| Sbjct 552988 TGATCAATGAAAACCCCACGGTCAGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 552929 Query 75578 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGAT---TTGTATTTTGAATGGAT 75634 |||| |||||| | | || ||| | |||| | |||| | | ||| ||| | | Sbjct 552928 CAAACAGTTTTATACAATTCTTTTAAATCAGCAGGAATTTCACTAATATATTGTACACTT 552869 Query 75635 CCGCCATCAGATAT-AATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAA 75693 || | || || |||||| | || || || |||| ||| | ||| || | Sbjct 552868 CCATTGTGAGCAATCAATTGTTGT-TTCATATCTTCATCCCAAAGGCCTCTATCAAAAAG 552810 Query 75694 AACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTA 75753 | || | | | |||||||||||||| ||||| ||| ||||| | || | || Sbjct 552809 ATCTTTTAATAAATGAGGATTAACAACAAAGAATTCACCACTTAATACACGTCTATAATA 552750 Query 75754 AATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGC 75813 || ||||| ||||||||||| | |||||||| |||||||||||||| | ||||||||| Sbjct 552749 GATGTTACTTGTATATGGTTCGAATGATTCATTATTTCCCAAAATTTGTGAAGTTGAAGC 552690 Query 75814 AGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTT 75873 || ||||||||||| | | | | |||||| | ||||| | || ||||| | ||| Sbjct 552689 TGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTTT 552630 Query 75874 TAGATATTTCCAATCCCAA-AGATCTGATGGTACA---ACATCCCAGAGATCGTATTGTA 75929 || | | |||||||||| | | | || ||| |||| ||| | ||| |||||| Sbjct 552629 TAATAAATCCCAATCCCAATATTTATTATC-TACTTTTACATTCCACATATCAAATTGTA 552571 Query 75930 GAATTCCGTTGCTAGCATATGAT-CCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCT 75988 || || | || || | | | || ||||||| ||| || | || | ||| ||| Sbjct 552570 ATATCCCTTGACTTGC-TGGGCTACCTTTATATGATTCATATGGTCCATGTATTTGTGCT 552512 Query 75989 AGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGA 76048 | ||| | | ||||| || | ||||| |||||||| || || | ||||| | Sbjct 552511 AATTCAACAGACATTTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTTATTTAAT 552452 Query 76049 TCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCC 76108 |||| |||||| | ||| | ||||| |||||| ||||||| ||||||| ||| Sbjct 552451 TCTTTAGCTTCATCAGATTCATATGGATATCTTAAAAGCATAAATGTGTCTGCTAATCCT 552392 Query 76109 TGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGG 76168 || ||||| || |||||||||| |||||| ||||| || ||||||||||| ||| ||| Sbjct 552391 TGTACTCCTATTCCAATAGGTCGATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTGGG 552332 Query 76169 TAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTT 76228 |||||||| | || |||||||||| | |||||| || | |||| | || | | Sbjct 552331 TAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATAT 552272 Query 76229 AGTTTGAGAAAATCAAA-----TTTTCCATCTATC-ACAAA----CATATTAAGAGCTAT 76278 | ||| ||||||||| |||| |||||| ||||| |||| | || || Sbjct 552271 AATTTTTTAAAATCAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAAT----GCAAT 552216 Query 76279 AGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCA 76338 || || | ||||||||| ||||| |||| || | ||||| ||||| || || Sbjct 552215 TGAAGCCAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATTATTTCACAACA 552156 Query 76339 TAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTC 76398 || ||||||||| || || ||||| | ||||| ||| || || ||||||| || Sbjct 552155 TAAATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATC 552096 Query 76399 CTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGAC 76458 ||||| | | | | || |||||||| || || || | ||||| ||| | Sbjct 552095 TTTATATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAATAGCAAACCATA- 552037 Query 76459 GACTCTAGCTTTTATTATAGATTTGTATC---GCTTCTCTCTTTCATATTGTGTATATAA 76515 | ||| | | | | || ||| | || || ||| |||||||| ||||||||| Sbjct 552036 -AATCTTG-TGCAAGAACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAA 551979 Query 76516 CCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAA 76575 ||||||||| || |||||| ||| || || ||||||||||| |||||||| | Sbjct 551978 TTTTTCAAATTCTTCACCCCAAGATTCACTTAACCCTGGACATTCATTAGGACACATTAG 551919 Query 76576 TGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAAT 76635 || ||| | | || ||| || || | ||||||||| | |||||||| ||| | |||| Sbjct 551918 TGTCCAATTTCTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATA 551859 Query 76636 AAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTC 76695 ||||| ||||| | ||| |||||| || || ||| ||| | | ||||| || || Sbjct 551858 AAATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTC 551799 Query 76696 CATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACC 76755 | ||||||||||||||||||||||| ||||| || | | ||| || ||| || Sbjct 551798 AAAAATATCAGAATGCCATGGTTCTATATATACAGCAAAAGAACCTTTTCTTTTTCCTCC 551739 Query 76756 TCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTT 76815 || ||||||| |||||| || || | |||| ||||||| |||||||||| | || || Sbjct 551738 ACCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATT 551679 Query 76816 AGATGTACCATTTGTTCCAGAAATATA--ACTTCCACATGCACGAATATTACTAATAGAT 76873 ||| ||||||| ||||| |||||| | ||| | | | |||| | || Sbjct 551678 TGATATACCATTAGTTCCTCTAATATAAGAATTC--TGTCCTCTTATATCTTGTACAGCA 551621 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | ||||| ||||| || ||||| |||| |||||| |||| ||||| ||| | || Sbjct 551620 ACTCCTATACCTCCCGCGGTTTTACTAATTAAAGCACATTGTTTTAATGTTTCAAATATA 551561 Query 76934 CCCTCTATACTATCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAAC 76992 || || ||| ||| |||| | ||| ||||| || |||||||| || | Sbjct 551560 CCTTCGATAGAATCTGATTTCATAGATAA-TAGAAAGCAAGATGACATTTGTGGACGTGG 551502 Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||||||| |||||| |||||||||| ||||| ||||| |||| | ||| | || || Sbjct 551501 TGTTCCTGAATTAAATAATGTAGGAGTAGCATGTGTGAAATATTTCTGAGACATTAAATG 551442 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 |||||||| | | || ||| | ||| | ||| ||||| | | || | ||| || Sbjct 551441 ATATGTTTCTAAAGCTTTTTCAAGATCATCTATATGTATTCCAATTGATACTCTCATTAA 551382 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 | ||| || || ||||| | | | ||||| || ||| || || |||||| |||| || Sbjct 551381 TAAATGTTGTGGACGTTCAATAATTTTATTGTTAATTCGTAATAAATATGATCTTTCTAA 551322 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTT 77209 ||||| || |||||||| | || ||| |||||| Sbjct 551321 TGTTTTGAATCCAAAATAATCATAGTTAAAATCTCTT 551285 >seq2 Length=1757347 Score = 230 bits (254), Expect = 3e-55 Identities = 398/573 (69%), Gaps = 14/573 (2%) Strand=Plus/Minus Query 46624 ATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAAT 46683 |||||||| ||||||| ||| | || ||||| |||||||||||||| ||| |||| Sbjct 1514251 ATTAAACAGTTAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAAAT 1514192 Query 46684 GTGAGCCCAGGCA--TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741 || | ||| | | ||| | | ||||| | |||||| || || ||| |||| Sbjct 1514191 GTTAAACCATGTAATTTATTTT--GTTTTTTAAACCAAAAAATTGCACAAAAACTTCCAC 1514134 Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAAC---TGGCAT 46798 ||| ||||| ||||||||| || || |||| ||| ||| | || | | || Sbjct 1514133 TAAATAATATTCCTTCTACACATGCATTAGCTACAATTCTTTCTGCAAAAGAATTTGTAT 1514074 Query 46799 CATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTA 46858 |||| ||||| | |||||| || || || || | | || || |||| | Sbjct 1514073 CATTT---ATCCATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAA 1514017 Query 46859 TAGCATTAAAGAGAAAGtt--tttttCATCACTATCTTTAACATATGTATCTATTAAAAG 46916 |||||| ||| | || || | |||| | |||||||| ||| |||| ||||| | Sbjct 1514016 TAGCATGAAATA--AATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAA 1513959 Query 46917 ACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGC 46976 |||||| |||| ||||| || ||||||| ||| || ||||| ||||| | |||| Sbjct 1513958 ACTATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGC 1513899 Query 46977 TTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATC 47036 |||| |||| | ||| ||| | ||||| || |||||| || || |||||||| Sbjct 1513898 TTCAATAATTTCTACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACAATTCCATC 1513839 Query 47037 ACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTT 47096 ||| || ||||||||||| || |||||||| ||||||| |||||||| | | | | ||| Sbjct 1513838 ACTTGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTAATTT 1513779 Query 47097 ATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTC 47156 | | || || | ||| | |||| ||| | ||||||||||||||| ||||| || || Sbjct 1513778 TTCAAAATCTTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTC 1513719 Query 47157 TGCTTTTTTATACATATTCCATATATCACGATA 47189 |||||||| || | |||||| | ||| |||| Sbjct 1513718 AGCTTTTTTGTAAAAATTCCAAACTTCAGGATA 1513686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712933027601280