Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq11 98.7 2e-15 seq3 95.1 3e-14 >seq11 Length=1061054 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| | ||| || |||||||| || || ||||| | || ||||| |||||||||| Sbjct 508876 ATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTG 508817 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 |||||| || || || | || || || || | | ||||||||| || ||||||||||| Sbjct 508816 TTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTATCTTGAATTTT 508757 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||| ||| | || | | || || ||||| |||||||| || ||||| || || Sbjct 508756 AGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTTTTTCCAGT 508697 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | || || || || | |||||| Sbjct 508696 TAATGTTTTTACAAAAATCTGCAT 508673 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || ||||| | || || |||||||| ||||| || || | || ||||| ||||||||| Sbjct 509337 ACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAGTGTTCTACCATCTTCT 509278 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | |||||| || || || | || || ||||| | | |||||||| || |||||| Sbjct 509277 AATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGA 509218 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 ||||| ||| ||| | || | | || || ||||| |||||||| ||||| || Sbjct 509217 ATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATAGTCTTT 509158 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | || || || || | |||||| Sbjct 509157 CCAGTTAATGTTTTTACAAAAATCTGCAT 509129 Score = 95.1 bits (104), Expect = 3e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| | ||| || |||||||| || || ||||| | || ||||| |||||||||| Sbjct 508648 ATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTG 508589 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 |||||| || || || | || || || || | | |||||||| || ||||||||||| Sbjct 508588 TTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTT 508529 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCC 152077 ||| ||| | || | | || || |||||| |||||||| |||||||| || Sbjct 508528 AGCTTTAACATTTTCAATAGTATCAGATGGCTCTACATCAAGAGTTATAGTTTTTCC 508472 >seq3 Length=1857262 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || ||||||||||| || || || || | ||| ||||| |||||||||| ||| || Sbjct 1608547 GTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTCTAACTGTTTTCCA 1608606 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || | || || || || | | |||||||| || ||||||||||| ||| Sbjct 1608607 GCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTAGCTTTA 1608666 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | |||| || || || |||||||| || ||||| || || | || Sbjct 1608667 ACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTT 1608726 Query 152088 TTCACGAAGACCTGCATTTT 152107 || || |||| |||||||| Sbjct 1608727 TTTACAAAGATTTGCATTTT 1608746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153818523367334