Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq12 206 2e-48 >seq12 Length=931358 Score = 206 bits (228), Expect = 2e-48 Identities = 444/657 (68%), Gaps = 14/657 (2%) Strand=Plus/Minus Query 101633 AATCTAAGTGTTGGAAACGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCAT-CAAT 101691 ||| |||| || || || || |||||||| | ||||| ||||| | ||| | |||| Sbjct 696997 AATTTAAGAGTAGGGAAAGGATAAGGAGTTCTATTTAACTGAATTTTTA-AGCTTTCAAT 696939 Query 101692 GTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATT 101751 |||| ||| | ||||||| || | ||| ||||| || | || || || Sbjct 696938 ATGATTATTATAAACATGAGCATTACCCAATACATGTATAAATTCAGCTGGTTGTAAGTT 696879 Query 101752 AGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCC 101811 | || || || ||||| | || || | |||||| ||||||||||||||| ||||| Sbjct 696878 ACATACTTGTGCTATCATATATGTAAATATAGAATAAGAAGCAATGTTAAATGGAACTCC 696819 Query 101812 TAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATA 101871 || || | |||| ||||||||||||| ||| || | ||||||||| | ||||| Sbjct 696818 TAGTCCTAAATCACAAGATCTTTGATACATAATACATGATAATTTTCCATCAAAAACATA 696759 Query 101872 AAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCA 101931 |||||||| ||| | |||||| || || || |||||||| | ||| |||||||| Sbjct 696758 AAATTGACATAAAATATGACATGGAGGTAATGCCATTTTATCTAAATCTTTTACATTCCA 696699 Query 101932 AGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTT 101991 ||||| | | || | |||| |||||| | |||| || || || | | ||| Sbjct 696698 TGCACATAAAATAATTCGTCTACATGTAGGATCATTTTTAATTAAATTTATAATATTTTT 696639 Query 101992 TAATTGGTCAACTCCTTCTCCTTTATA---ATCGCGCCCAACACCTTTATATTCTGCTCC 102048 || ||| ||||| |||| ||||||| ||| || | | || ||||||| || || Sbjct 696638 TAGTTGATCAACACCTTTATCTTTATAATTATCATGC---ATATCTGTATATTCAGCACC 696582 Query 102049 GAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATC---TCCTTCATCTCTGTCATA 102105 ||||| ||||| || |||||||| | ||| |||||||| |||| ||| || ||| Sbjct 696581 AAAATGTCTCCATTGGAATCCATAAATAGGACCAAGATCATTAACTTC-TCTATGAAATA 696523 Query 102106 AAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGC 102165 | | | |||||||||||| ||| | |||||| || ||||| || || Sbjct 696522 ATTTTCTA--TTATCTAAAAATTCTCTTGTTCCATTAGCTTCCCATATTCTTACATTTTT 696465 Query 102166 TGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAAC 102225 | || | | || | | || |||||| |||||||| || | |||||||| || Sbjct 696464 TTCTAACAATGTATTTCCATTTGTTTCTCCTCTTATAAACCATAATAATTCTTCAATAAT 696405 Query 102226 ACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAATTCATTTTCTAAACTAAA 102282 ||||| | ||||| | | || || ||||| | |||||| | | | |||| |||| Sbjct 696404 ACCTCGCACAAATAATTTTTTTGTTGTTAATAATGGAAAATATTGATTTAAATTAAA 696348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361250332658447