Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq11 434 1e-116 seq2 203 4e-47 >seq11 Length=1045168 Score = 434 bits (480), Expect = 1e-116 Identities = 1124/1696 (66%), Gaps = 34/1696 (2%) Strand=Plus/Minus Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008 ||||| ||||| | || | ||| |||||||| | || || ||||||| ||||||| Sbjct 533659 TGATCAATGAAAACCCCACGGTCAGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 533600 Query 53009 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATAGA 53064 |||| ||||||||| || || |||| ||| | |||| | | ||| || | | Sbjct 533599 CAAACAGTTTTATACAATTCTTTTAA-ATCAGCAGGAATTTCACTAATATATTGTACACT 533541 Query 53065 TCCACCATCTACCAT-AATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 53123 |||| | | || ||| | | || || || |||| ||| | ||| || | Sbjct 533540 TCCATTGTGAGCAATCAATTGTTGT-TTCATATCTTCATCCCAAAGGCCTCTATCAAAAA 533482 Query 53124 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 53183 | || | | | ||| |||||||| || ||||| ||| ||||| | | | | Sbjct 533481 GATCTTTTAATAAATGAGGATTAACAACAAAGAATTCACCACTTAATACACGTCTATAAT 533422 Query 53184 AAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 53243 | || ||||| ||||| ||||| | || |||||||||||||||||||| | |||||| | Sbjct 533421 AGATGTTACTTGTATATGGTTCGAATGATTCATTATTTCCCAAAATTTGTGAAGTTGAAG 533362 Query 53244 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTT 53303 | || ||||||||||| | | | | |||||| | || | | || ||||| | || Sbjct 533361 CTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTT 533302 Query 53304 TTAGAGGTTCCCAATTCCAAAGATCCGACGGTACA---ACNNNNNNNNNNNNNNNTTGTA 53360 ||| ||||||| |||| | ||| || ||||| Sbjct 533301 TTAATAAATCCCAATCCCAATATTTATTATCTACTTTTACATTCCACATATCAAATTGTA 533242 Query 53361 GAATACCGTTACTGGCGTACGAT-CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT 53419 || || | ||| || | | | ||| ||||| || |||||||| | | | ||| Sbjct 533241 ATATCCCTTGACTTGC-TGGGCTACCTTTATATGATTCATATGGTCCATGTATTTGTGCT 533183 Query 53420 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGA 53479 | |||| | | ||||| || | ||||| || ||||| || || | ||||||| Sbjct 533182 AATTCAACAGACATTTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTTATTTAAT 533123 Query 53480 TCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATC 53537 |||| ||||| ||| | || ||||||| |||| || ||||| | ||||||||||| Sbjct 533122 TCTTTAGCTTCATCAGATT--CATATGGATATCTTAAAAGCATAAATGTGTCTGCTAATC 533065 Query 53538 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAG 53597 |||| || || || || ||||||| |||||| ||||| || ||||||||||| ||| | Sbjct 533064 CTTGTACTCCTATTCCAATAGGTCGATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTG 533005 Query 53598 GATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCT 53657 | |||||||| | || |||||||||| | ||||| ||| | ||| | ||| | Sbjct 533004 GGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCAT 532945 Query 53658 TCAGTTTGAGAAAATCAAA-----TTGTCCATCTAT-TACAAACATGTTCAATGCAATAG 53711 | ||| ||||||||| || | ||||| ||||| || |||||||| | Sbjct 532944 ATAATTTTTTAAAATCAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATTG 532885 Query 53712 ATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAA 53771 | |||| ||||||||| ||||| |||| || | ||||| ||||| ||| || | Sbjct 532884 AAGCCAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATTATTTCACAACATA 532825 Query 53772 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 53831 ||||||||| || || ||||||||||||| ||||||| || ||||| ||||| | Sbjct 532824 AATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATCTT 532765 Query 53832 TATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGA 53891 |||| | || |||| ||||||||| || || || || ||| || ||| | Sbjct 532764 TATATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAAT 532705 Query 53892 CACGAGCCTTTATTATAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATACAATC 53948 | | || | | || ||| | || |||||| ||| ||| |||||| ||| Sbjct 532704 CTTGTGC---AAGAACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAATT 532648 Query 53949 GTTCAAACTCGTCTCCCCAAACATTGTC-CAATCCAGGACATTCATCCGGACACATCAAC 54007 |||||| || || |||| || ||| | || || |||||||||| |||||||| | Sbjct 532647 TTTCAAATTCTTCACCCC-AAGATTCACTTAACCCTGGACATTCATTAGGACACATTAGT 532589 Query 54008 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 54067 | ||| | || | || || |||| ||||||||| | |||||| | ||||| ||| | Sbjct 532588 GTCCAATTTCTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAA 532529 Query 54068 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 54127 |||| |||||| | ||| ||| || || || ||| ||| | | ||| | || | Sbjct 532528 AATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCA 532469 Query 54128 ATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCT 54187 | ||||||||||||||| ||||| | |||| | | | || | ||| ||| Sbjct 532468 AAAATATCAGAATGCCATGGTTCTATATATACAGCAAAAGAACCTTTTCTTTTTCCTCCA 532409 Query 54188 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 54247 || ||||||| |||||||| || | |||| ||||||| |||||||||| | |||||| Sbjct 532408 CCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATTT 532349 Query 54248 GATGCACCATTGGTCCCGGAGATAT-AGCTTCCACTGGCACGAATATTACTAATTGATAG 54306 ||| |||||| || || |||| || | | | | | |||| | | | Sbjct 532348 GATATACCATTAGTTCCTCTAATATAAGAATTCTGT-CCTCTTATATCTTGTACAGCAAC 532290 Query 54307 ACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 54366 ||||| || || || ||||| ||||| || ||| ||||||| || ||| | || || Sbjct 532289 TCCTATACCTCCCGCGGTTTTACTAATTAAAGCACATTGTTTTAATGTTTCAAATATACC 532230 Query 54367 CTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 54425 || ||| ||| |||| | ||| |||||| || |||||||| |||| | Sbjct 532229 TTCGATAGAATCTGATTTCATAGATAA-TAGAAAGCAAGATGACATTTGTGGACGTGGTG 532171 Query 54426 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 54485 |||| | ||||||||| ||||||| ||| || || || |||| | ||| | || || | Sbjct 532170 TTCCTGAATTAAATAATGTAGGAGTAGCATGTGTGAAATATTTCTGAGACATTAAATGAT 532111 Query 54486 ACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 54545 | || || | |||| || | ||| | ||| ||||| | || || | |||||| | Sbjct 532110 ATGTTTCTAAAGCTTTTTCAAGATCATCTATATGTATTCCAATTGATACTCTCATTAATA 532051 Query 54546 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAG 54605 || || || | ||||| || || ||||| ||| | || || ||| |||| || | Sbjct 532050 AATGTTGTGGACGTTCAATAATTTTATTGTTAATTCGTAATAAATATGATCTTTCTAATG 531991 Query 54606 TTTTAAAACCAAAATA 54621 |||| || |||||||| Sbjct 531990 TTTTGAATCCAAAATA 531975 >seq2 Length=1760775 Score = 203 bits (224), Expect = 4e-47 Identities = 374/546 (68%), Gaps = 2/546 (0%) Strand=Plus/Minus Query 24150 TGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 24209 |||| |||||| || |||||||||||||| || ||| || | || | | | Sbjct 1547137 TGTAAACCCTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCATGTAATTTATTT 1547078 Query 24210 CGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCC 24269 | ||||||| |||||| || | ||| |||| ||| || ||||||||||| Sbjct 1547077 TGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATTCCTTCTACACAT 1547018 Query 24270 GCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAA 24329 ||| || | || ||||||| || || | |||| |||||| || |||||| Sbjct 1547017 GCATTAGCTACAATTCTTTCTGCAAAAGAATTTGTATCATTTATCCATTTAGCAGCCCAT 1546958 Query 24330 TCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCA 24389 || || ||||| | | || || | || ||||||| ||| | || | |||| Sbjct 1546957 AATGCTTTATTTTTGATAGCTGGTATATTTTCAATAGCATGAAATAAATTTAATCTTTCT 1546898 Query 24390 TTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCA 24449 || |||||||| ||| ||||||| || | |||||| |||| ||||| || |||||| Sbjct 1546897 TTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTTTCAGAATGTATATTTTCA 1546838 Query 24450 ATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAAT 24509 | || |||||||| || || | | || || |||| | ||||||| | ||||| Sbjct 1546837 ACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATAATTTCTACTTCTCTTAAAAAT 1546778 Query 24510 CGTTCT-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 24568 | || || |||||||| || ||||| ||||| ||||||||||| || || ||||| Sbjct 1546777 T-TACTAGCCAAATTTTCTAATACAATTCCATCACTTGCTGCAAAAAATGCTAAAACATG 1546719 Query 24569 TTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATAT 24628 ||||||||||| |||||| | ||| ||| | |||| || | ||| | |||| Sbjct 1546718 TTTTATAAAATGTTTTTCATTGACATTTAATTTTTCAAAATCTTTCAAATCGCTCGATAA 1546659 Query 24629 ATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTC 24688 ||| | |||||| ||||||||||||| || || || ||||| || | |||||| | || Sbjct 1546658 ATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTTTGTAAAAATTCCAAACTTC 1546599 Query 24689 ATGATA 24694 | |||| Sbjct 1546598 AGGATA 1546593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720137960560