Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq12 212 4e-50 >seq12 Length=931358 Score = 212 bits (234), Expect = 4e-50 Identities = 397/581 (68%), Gaps = 2/581 (0%) Strand=Plus/Minus Query 97051 TCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACT 97110 ||||| ||||| ||||| ||||||| || || || |||||||| | || | Sbjct 696943 TCAATATGATTATTATAAACATGAGCATTACCCAATACATGTATAAATTCAGCTGGTTGT 696884 Query 97111 AAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGC 97170 || | | || || || |||||| | || |||| |||||| |||||||||||| || Sbjct 696883 AAGTTACATACTTGTGCTATCATATATGTAAATATAGAATAAGAAGCAATGTTAAATGGA 696824 Query 97171 ACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACAC 97230 || |||||||| | |||| ||||||||||| | ||| || | ||||||||| | Sbjct 696823 ACTCCTAGTCCTAAATCACAAGATCTTTGATACATAATACATGATAATTTTCCATCAAAA 696764 Query 97231 ACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACA 97290 |||||||| |||| || | |||||| || || || |||||||| | |||| ||| Sbjct 696763 ACATAAAATTGACATAAAATATGACATGGAGGTAATGCCATTTTATCTAAATCTTTTACA 696704 Query 97291 TTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATC 97350 ||||| ||||| | | |||| |||| || || | | | || ||| || || Sbjct 696703 TTCCATGCACATAAAATAATTCGTCTACATGTAGGATCATTTTTAATTAAATTTATAATA 696644 Query 97351 TGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCT 97410 | |||| ||||||||| |||| | |||||| | | | | || |||||| || Sbjct 696643 TTTTTTAGTTGATCAACACCTTTATCTTTATAATTATCATGCATATCTGTATATTCAGCA 696584 Query 97411 CCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAG 97470 |||||||| ||||||||||||||||||| ||| ||||| || ||||||||| | | Sbjct 696583 CCAAAATGTCTCCATTGGAATCCATAAATAGGACCAAGATCATTAACTTCTCTATGAAAT 696524 Query 97471 AAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGAT 97530 || ||||||||| | || | |||||| || ||||| || ||| | Sbjct 696523 AATTTTCTATTATCTAAAAATTCTCTTGTTCCATTAGCTTCCCATATTCTTACATTTTTT 696464 Query 97531 GCT-GCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAAC 97589 || ||| | ||| | | || |||||| |||||||| || |||||||| | || Sbjct 696463 TCTAACAATGTATTT-CCATTTGTTTCTCCTCTTATAAACCATAATAATTCTTCAATAAT 696405 Query 97590 ACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAAAT 97630 ||||| | ||||| | | || |||||||| | ||||||| Sbjct 696404 ACCTCGCACAAATAATTTTTTTGTTGTTAATAATGGAAAAT 696364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346783167393290