Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq11 86.0 5e-12 seq3 82.4 7e-11 >seq11 Length=1045168 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | |||||| || || || || | || || ||||||||||| || ||||| Sbjct 486637 TACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAG 486578 Query 118570 TCATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627 |||||| | ||| || | ||||| ||||| | || | | || ||||| || Sbjct 486577 --ATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGG 486520 Query 118628 AGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCT 118686 ||| || || || || ||| |||||| |||||| | ||| | || || | || | | Sbjct 486519 AGGGATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGT-T 486461 Query 118687 CGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || | || | ||||| || || | |||||||||||||||||||| Sbjct 486460 CTACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 486409 >seq3 Length=1889938 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GCTCATAGTGCGCGTATCCTC 118588 ||||| || | || |||||||||||||| || || || | | || | || ||| || Sbjct 1688183 ACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCC-ATCTTC 1688241 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | |||||||||||| | || | | || ||||| ||||| || || || || ||| Sbjct 1688242 TAACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTG 1688301 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTT 118707 |||||| |||||| | ||| | ||||| | || | || || || | || | |||| Sbjct 1688302 AATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGT-TCAACATCAAGAGTGATTGTTT 1688360 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| | ||||||||||| || ||||| Sbjct 1688361 TTCCGGTTAATGTTTTTACAAAGATTTGCAT 1688391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829358400324