Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq11 158 2e-33 seq3 156 6e-33 >seq11 Length=1045168 Score = 158 bits (174), Expect = 2e-33 Identities = 117/137 (85%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | |||||| || ||||||||||| |||||||| ||||||||||| || Sbjct 486407 CCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGAT 486348 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| ||||||||||| ||||||||||| |||||||| ||||| |||||| Sbjct 486347 AGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGA 486288 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||||||||| Sbjct 486287 ATTCCTTCTTTATCTTG 486271 Score = 156 bits (172), Expect = 6e-33 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | |||||| || ||||||||||| |||||||| ||||||||||| || Sbjct 486635 CCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGAT 486576 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| ||||||||||| ||||||||||| |||||||| ||||| ||||| Sbjct 486575 AGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGG 486516 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||||||||| |||||| || |||||| Sbjct 486515 ATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACA 486456 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || || ||||| || ||||||||||| | || || ||||| Sbjct 486455 TCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 486409 Score = 134 bits (148), Expect = 2e-26 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | |||||| || | |||||| || |||||||| || ||||| || || Sbjct 486863 CCTCCTCTTAATCTTAAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGAT 486804 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| ||||||||||| ||||||||||| |||||||| || || |||||| Sbjct 486803 AGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGA 486744 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||| ||||||||||| |||||| || |||||| Sbjct 486743 ATTCCCTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACA 486684 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || || ||||| || ||||||||||| | || || ||||| Sbjct 486683 TCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 486637 >seq3 Length=1889938 Score = 156 bits (172), Expect = 6e-33 Identities = 180/249 (72%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 146065 TAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 || |||||||||||| || || ||||| |||||||| || || | ||||||| ||| Sbjct 1688179 TATTACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATC 1688238 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 ||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||| Sbjct 1688239 TTCTAACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATC 1688298 Query 146185 TTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGT 146244 ||| ||| || || ||| || || || |||||||| Sbjct 1688299 TTGAATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGT 1688358 Query 146245 TTTACCTGTTAATGTTTTAATGAATATTTGCATTTT----ATTAGAAAAATATTTGTTaa 146300 ||| || ||||||||||| | || ||||||||||| | || ||||||| | | | Sbjct 1688359 TTTTCCGGTTAATGTTTTTACAAAGATTTGCATTTTCGTAAGTATAAAAATAAT--ATGA 1688416 Query 146301 aaaaaaTAA 146309 ||||||||| Sbjct 1688417 AAAAAATAA 1688425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743524569066240