Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq2 248 8e-61 >seq2 Length=1760775 Score = 248 bits (274), Expect = 8e-61 Identities = 606/903 (67%), Gaps = 29/903 (3%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 ||||||||| || ||| ||||| || | || | | | | || ||||| || ||| Sbjct 1547500 TAAAAATCAGTATTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGACTTT 1547441 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 ||||| || |||||||||||||||||| || ||||| |||| | ||||| ||| Sbjct 1547440 TGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAATCC 1547381 Query 13976 ATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAG---TTCTAATAGT 14032 || ||| || || ||| | || ||| |||||| ||| |||| |||||||| Sbjct 1547380 ATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAACATCCTAAACATTCTAATA-- 1547323 Query 14033 AATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 14092 ||||||| |||| || ||||||||||||||||| | ||||||| || |||| Sbjct 1547322 -ATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCATTCCAATTAAA 1547264 Query 14093 TTTACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 14151 | ||| | | ||| || |||| | |||||| || || || || | || Sbjct 1547263 TCACAAGGTAA-AGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTAT 1547205 Query 14152 AATCGTAATAATTTCATTAGAAGG-AGGATATTTTAGATGTT--TAAAAATTAAACACGC 14208 | | || || |||| || | |||||| | || |||||||||| Sbjct 1547204 ATTTTGAACAA---CATTTTCTGGTAATTTATTTTCTAATAAACTATAAATTAAACAGTT 1547148 Query 14209 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-TG 14267 ||||||| ||| | |||||||| |||||||| | ||| || ||||||||| || || Sbjct 1547147 AAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCATG 1547088 Query 14268 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTC 14327 || || | ||||||| |||||||| |||||| || ||| ||| ||||||| Sbjct 1547087 TAATTTATTTT-GTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATTC 1547029 Query 14328 CCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCC 14387 | || || ||| |||| | || |||| |||| || | | | || ||||| Sbjct 1547028 CTTCTACACATGCATTAGCTACAATTCTTTCTGCAAAAGAATTTGTATCATT---TATCC 1546972 Query 14388 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14447 |||| ||||||| | ||| ||||| ||| || |||||||||||| ||||| Sbjct 1546971 ATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAATAGCATGAAATA 1546912 Query 14448 AATGT--TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 14505 ||| | || |||| ||| | ||| ||| || ||||||| | ||| ||||| |||| Sbjct 1546911 AATTTAATCTTTCTTTTTCAT-CTT-TAATATAATTATCAATTAATAAACTATATGTTTC 1546854 Query 14506 AGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTG 14565 ||| ||||| ||||| | |||||| |||||| |||||| | | ||||| || Sbjct 1546853 AGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATAATTTC 1546794 Query 14566 TACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14625 ||| ||| ||||| | ||||||||||| || || |||||||| |||||||| Sbjct 1546793 TACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACAATTCCATCACTTGCTGCAAA 1546734 Query 14626 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG---CTGAGTTTTTTCCAATC 14682 |||||| || | | ||| |||| | || | ||||||| | | ||||| |||| Sbjct 1546733 AAATGCTAAAACATGTTTTATAA---AATGTTTTTCATTGACATTTAATTTTTCAAAATC 1546677 Query 14683 GGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTT 14742 ||||| | || | ||| | ||| ||| |||||||||| ||| |||||||||| Sbjct 1546676 TTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTTT 1546617 Query 14743 ATA 14745 || Sbjct 1546616 GTA 1546614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482344412223960