Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq12 143 4e-29 seq5 91.5 2e-13 >seq12 Length=931358 Score = 143 bits (158), Expect = 4e-29 Identities = 392/595 (66%), Gaps = 34/595 (6%) Strand=Plus/Plus Query 104167 GACGATAGAACAGGAATTGGAACTAAAAATGTATTTGGAGAACAATTAAAATTTAATTTA 104226 || ||||||||||| |||| || | ||||||| | | |||||||||||| Sbjct 696297 GATGATAGAACAGGTGTTGGTGTGTTAAGTAAATTTGGATATATGATGAAATTTAATTTA 696356 Query 104227 AGAACATCTTTTCCGTTACTAACTACaaaaaaaGTTTTTTGGAAAGGAGTTGTAGAAGAA 104286 | || |||||| ||| |||| ||||||||| | ||| | ||| || | |||||| Sbjct 696357 AATCAATATTTTCCATTATTAACAACAAAAAAATTATTTGTGCGAGGTATTATTGAAGAA 696416 Query 104287 CTCTTATGGTTTATTAGCGGGAGTACAGATGTTTCTGTATTAAATCAAAAAGGAGTTAAA 104346 | ||||||||||| || || ||| ||| | ||| ||||| || | | Sbjct 696417 TTATTATGGTTTATAAGAGGAGAAACAAATGGAAATACATTGTTAGAAAAAAATGTAAGA 696476 Query 104347 ATTTGGAATAAAAATGCA------GAATCGTTTTATACACAACAAAATCTTTT--Taaaa 104398 || ||| | |||| | |||| ||||| | | | ||||| ||| || | Sbjct 696477 ATATGGGAAGCTAATGGAACAAGAGAAT--TTTTAGATAATAGAAAATTATTTCATAGAG 696534 Query 104399 aa---aaTGATTTAGGACCTATTTATGGTTTTCAGTGGAGACATTATGGTGAAAATTATA 104455 || |||||| | || ||||||||||| || || |||||||||| ||||| | |||| Sbjct 696535 AAGTTAATGATCTTGGTCCTATTTATGGATTCCAATGGAGACATTTTGGTGCTGAATATA 696594 Query 104456 TTGGG-TGC--GATAAT---AAATATGGTGGTATAGATCAACTCAAAAATATTATTACAA 104509 | ||| |||||| ||| || ||| | |||||||| ||||||||||| | Sbjct 696595 CAGATATGCATGATAATTATAAAGATAAAGGTGTTGATCAACTAAAAAATATTATAAATT 696654 Query 104510 CAATTCAAAATGAACCTTGGGATAGAAGAATGATATTATTAGCTTGGAACCCAAAGGATA 104569 |||| ||||||| ||| |||| |||| || |||| || ||||| ||| ||| Sbjct 696655 TAATTAAAAATGATCCTACATGTAGACGAATTATTTTATGTGCATGGAATGTAAAAGATT 696714 Query 104570 ATTCTAAAATGGCACTTCCTCCTTGTCATTGTATAGCACATTTTGATGTAAGTTCAAAAA 104629 |||||||||| | ||||| |||||| | || || ||| |||| || Sbjct 696715 TAGATAAAATGGCATTACCTCCATGTCATATTTTATGTCAATTTTATGT---TT------ 696765 Query 104630 TAAATGGTAAAAGAGAATTGTCTTGTCATTTATTTCAAAGATCTGCAGATATGGGGTTGG 104689 | ||| || |||| || ||| | | | |||||||||| ||| | || | | Sbjct 696766 TTGATG------GAAAATTATCATGTATTATGTATCAAAGATCTTGTGATTTAGGACTAG 696819 Query 104690 GAGTTCCTTTTAACATAGCAAGTTATGCATTATTAACACATATAATAGCTCATGT 104744 ||||||| |||||||| || |||| | |||| ||| |||| ||||| || || Sbjct 696820 GAGTTCCATTTAACATTGCTTCTTATTCTATATTTACATATATGATAGCACAAGT 696874 >seq5 Length=2639166 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/190 (71%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 73930 ATGGAGATATACTAGTGCTAAATAGACAACCTACTTTACATAAAGCATCAATGATGGCTC 73989 |||||||||| || | | ||||||||||| |||||||| || || ||| || Sbjct 1796640 ATGGAGATATTGTATTATTTAATAGACAACCCTCTTTACATCGTATGTCTATTATGTGTC 1796581 Query 73990 TTCGAGTTAAAATTATGGATGTAAAAACCTTTAAATTTAATCT---TGCATGCACTAAAC 74046 | || || | |||||||| ||||| ||| |||||| || || || | Sbjct 1796580 ATAAAGCTAGAGTTATGGATTATAAAACATTTCGTTTTAATGAATGTGTTTG---TAGCC 1796524 Query 74047 CATATAATGCAGATTTTGATGGAGATGAAATGAATGCTCATGCGCCTCAATCAGAAGAAA 74106 | ||||||||||||||||||||||||||||||||| |||| |||||| | |||||| Sbjct 1796523 CTTATAATGCAGATTTTGATGGAGATGAAATGAATTTACATGTACCTCAAACTGAAGAAT 1796464 Query 74107 GTAAAGCTGA 74116 || ||| || Sbjct 1796463 CTAGAGCAGA 1796454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679812725957040