Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq3 122 7e-23 seq11 111 1e-19 >seq3 Length=1889938 Score = 122 bits (134), Expect = 7e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| || | ||||| ||||||||||| || ||||| | | |||| | | |||||| Sbjct 1688182 TACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTC 1688241 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 || ||||| || ||| | || | |||||||||||| || | ||||| ||||| Sbjct 1688242 TAACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTG 1688301 Query 18236 AATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 ||||| | || || || | | ||| ||||||| || || |||| ||||| ||| Sbjct 1688302 AATTT-TAGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTT 1688360 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 | ||||| |||||||||||||| ||||||||||| Sbjct 1688361 TTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1688394 >seq11 Length=1045168 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 ||||||||||||||||| || || || | | |||| ||| |||||| |||||||| || Sbjct 486605 GTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCA 486546 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 ||| | || | |||||||||||| || | ||||| ||||| ||||| | || || Sbjct 486545 GCAAAAATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTATCTTGAATTT-TAGCTTT 486487 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 || | | ||| ||| || || || |||| || ||| |||| || || ||||| Sbjct 486486 AACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTTTTTCCAGTTAATGT 486427 Query 18308 TTTTACAAAAATTTGCAT 18325 |||||||||||| ||||| Sbjct 486426 TTTTACAAAAATCTGCAT 486409 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 |||||||||||||||||||| ||||| | | |||| ||| |||||| |||||||| || Sbjct 486833 GTTGATTCTTTTTGAATGTTATAGTCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCA 486774 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 ||| | || | ||||||||| || || | || || ||||| |||| | || || Sbjct 486773 GCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCCTCTTTATCTTGGATTT-TAGCTTT 486715 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 || | | ||| ||| || || || |||| || ||| |||| || || ||||| Sbjct 486714 AACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTTTTTCCAGTTAATGT 486655 Query 18308 TTTTACAAAAATTTGCAT 18325 |||||||||||| ||||| Sbjct 486654 TTTTACAAAAATCTGCAT 486637 Score = 82.4 bits (90), Expect = 6e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 ||||||||||||||||| || || || | | |||| ||| |||||| |||||||| || Sbjct 486377 GTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCA 486318 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 ||| | || | |||||||||||| || | ||||| ||||| ||||| | || || Sbjct 486317 GCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTT-TAGCTTT 486259 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTC 18274 || | | ||| ||| ||| ||||| Sbjct 486258 AACATTTTCAATAGTATCAGATGGCTC 486232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343089218765