Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq11 446 2e-120 seq2 192 7e-44 >seq11 Length=1045168 Score = 446 bits (494), Expect = 2e-120 Identities = 1125/1694 (66%), Gaps = 30/1694 (2%) Strand=Plus/Minus Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 ||||| ||||| | || | ||| |||||||| | || || ||||||| ||||||| Sbjct 533659 TGATCAATGAAAACCCCACGGTCAGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 533600 Query 62247 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 62302 |||| ||||||||| || || |||| ||| | |||| | | ||| || | Sbjct 533599 CAAACAGTTTTATACAATTCTTTTAA-ATCAGCAGGAATTTCACTAATATATTGTACACT 533541 Query 62303 TCCACCATCTACCAT-AATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 62361 |||| | | || ||| | | || || || |||| ||| | ||| || | Sbjct 533540 TCCATTGTGAGCAATCAATTGTTGT-TTCATATCTTCATCCCAAAGGCCTCTATCAAAAA 533482 Query 62362 AAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGT 62421 | || | | | ||| || ||||| || |||||| ||| ||||| | | | | Sbjct 533481 GATCTTTTAATAAATGAGGATTAACAACAAAGAATTCACCACTTAATACACGTCTATAAT 533422 Query 62422 AAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 62481 | || ||||| ||||| ||||| | || |||||||||||||||||||| | |||||| | Sbjct 533421 AGATGTTACTTGTATATGGTTCGAATGATTCATTATTTCCCAAAATTTGTGAAGTTGAAG 533362 Query 62482 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTT 62541 | || ||||||||||| | | | | |||||| | || | | || ||||| | || Sbjct 533361 CTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTT 533302 Query 62542 TTAGATGTTCCCAATTCCAAAGATCCGACGGTACA---ACANNNNNNNNNNNATATTGTA 62598 ||| ||||||| |||| | ||| ||| | |||||| Sbjct 533301 TTAATAAATCCCAATCCCAATATTTATTATCTACTTTTACATTCCACATATCAAATTGTA 533242 Query 62599 GAATACCGTTACTGGCGTACGAT-CCTACATATGTATCATATGGTCCTTCCTTCTCAGCT 62657 || || | ||| || | | | ||| ||||| ||||||||||| | | | ||| Sbjct 533241 ATATCCCTTGACTTGC-TGGGCTACCTTTATATGATTCATATGGTCCATGTATTTGTGCT 533183 Query 62658 AGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGA 62717 | || | | | ||||| || | ||||| || |||||||| || | ||||||| Sbjct 533182 AATTCAACAGACATTTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTTATTTAAT 533123 Query 62718 TCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCT 62777 |||| ||||| ||| ||||||| |||| || ||||| | ||| ||||||||| Sbjct 533122 TCTTTAGCTTCATCAGATTCATATGGATATCTTAAAAGCATAAATGTGTCTGCTAATCCT 533063 Query 62778 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGA 62837 || || || || || ||||||| |||||| ||||| || ||||||||||| ||| || Sbjct 533062 TGTACTCCTATTCCAATAGGTCGATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTGGG 533003 Query 62838 TAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTC 62897 |||||||| | || |||||||||| | |||||| ||| | ||| | ||| | Sbjct 533002 TAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATAT 532943 Query 62898 AGTTTGAGAAAATCAAATCGCCCAT-----CTATTA-CAAACATGTTCAATGCAACAGAT 62951 | ||| |||||||||| | |||| | |||| || ||||||| || Sbjct 532942 AATTTTTTAAAATCAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATTGAA 532883 Query 62952 GCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 63011 |||| |||||| || ||||| |||| || | ||||| ||||| ||| || | | Sbjct 532882 GCCAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATTATTTCACAACATAAA 532823 Query 63012 TTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 63071 |||||||| || || ||||||||||||| ||||||| || ||||| ||||| ||| Sbjct 532822 TTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATCTTTA 532763 Query 63072 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 63131 || | || |||| ||||||||| || ||| || || ||| || ||| | || Sbjct 532762 TATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAATCT 532703 Query 63132 CGAGCCTTTATTATAGATTTGTATC---TCCTTTCTCTTTCGTATAGAGTATACAATCGT 63188 | || | | || ||| | || ||||| ||| ||| ||||| ||| | Sbjct 532702 TGTGC---AAGAACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAATTTT 532646 Query 63189 TCGAACTCGTCTCCCCAAACATTGTC-CAATCTAGGACATTCATCCGGACACATCAACGA 63247 || || || || |||| || ||| | || | |||||||||| |||||||| | | Sbjct 532645 TCAAATTCTTCACCCC-AAGATTCACTTAACCCTGGACATTCATTAGGACACATTAGTGT 532587 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307 ||| | || | || || |||| ||||||||| | |||||| | ||||| ||| ||| Sbjct 532586 CCAATTTCTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAA 532527 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 || |||||| | ||| ||| || || || ||| ||| | | ||| | || | | Sbjct 532526 TAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAA 532467 Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427 ||||||||||||||| ||||| | |||| || | | || | ||| ||| || Sbjct 532466 AATATCAGAATGCCATGGTTCTATATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACC 532407 Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487 ||||||| |||||||| || | |||| ||||||| |||||||||| | ||| ||||| Sbjct 532406 TTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATTTGA 532347 Query 63488 TATACCATTGGTACCGGAGATAT-AGCCTCCACTGGCACGAATATTACTAATTGATAGAC 63546 ||||||||| || || |||| || | | | | | |||| | | | | Sbjct 532346 TATACCATTAGTTCCTCTAATATAAGAATTCTGT-CCTCTTATATCTTGTACAGCAACTC 532288 Query 63547 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTT 63606 |||| || || || ||||| ||||| || ||| ||||||| || ||| | || |||| Sbjct 532287 CTATACCTCCCGCGGTTTTACTAATTAAAGCACATTGTTTTAATGTTTCAAATATACCTT 532228 Query 63607 CTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTT 63665 | || ||| |||| | ||| |||||| || |||||||| |||| | ||| Sbjct 532227 CGATAGAATCTGATTTCATAGATAA-TAGAAAGCAAGATGACATTTGTGGACGTGGTGTT 532169 Query 63666 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63725 || | ||||||||| ||||||| ||| || || || |||| | ||| | || || || Sbjct 532168 CCTGAATTAAATAATGTAGGAGTAGCATGTGTGAAATATTTCTGAGACATTAAATGATAT 532109 Query 63726 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63785 || || | |||| || | ||| | ||| ||||| | || || | |||||| | Sbjct 532108 GTTTCTAAAGCTTTTTCAAGATCATCTATATGTATTCCAATTGATACTCTCATTAATAAA 532049 Query 63786 TGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63845 || || || | ||||| |||||| ||||| ||| || || || ||| |||| || ||| Sbjct 532048 TGTTGTGGACGTTCAATAATTTTATTGTTAATTCGTAATAAATATGATCTTTCTAATGTT 531989 Query 63846 TTAAAACCAAAATA 63859 || || |||||||| Sbjct 531988 TTGAATCCAAAATA 531975 >seq2 Length=1760775 Score = 192 bits (212), Expect = 7e-44 Identities = 611/932 (66%), Gaps = 29/932 (3%) Strand=Plus/Minus Query 33226 TTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAA--TGATTGTCTTCTT-GAGACATAA 33282 |||| ||| |||||| ||| || ||||||||| | || | ||||| ||| ||||| Sbjct 1547511 TTATATTTTCTTAAAAATCAGTATTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAA 1547452 Query 33283 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATG 33342 | || ||||| || || | || | |||||| || ||||| |||||||||| || | Sbjct 1547451 CACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAG 1547392 Query 33343 ATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAA-- 33400 |||| ||||| ||| || || || || || ||| ||| | |||| || Sbjct 1547391 ATATTAAATCCATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAACATCCTAAAC 1547332 Query 33401 -TTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCA 33459 ||| ||| |||||||| || || ||||| |||||| ||| | |||||| Sbjct 1547331 ATTCT--AAT-AATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCA 1547275 Query 33460 TTCCTATGAGTTTAACTGG--AAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGC 33517 |||| || | | | || |||| |||| || |||| | ||| | || || Sbjct 1547274 TTCCAATTAAATCACAAGGTAAAGATTCACA--AATAAATGATCTTTCTACTTCAACTGC 1547217 Query 33518 ATTTGTTATAATAAATCT-----AACGGTTTCT--TCACTCGGTGGATGTAATAAATGTT 33570 | | ||| | || || | ||| ||||| | | | | | ||||||| Sbjct 1547216 TTCT-TTA-ACTATATTTTGAACAACATTTTCTGGTAATTTATTT--TCTAATAAAC--- 1547164 Query 33571 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAG 33630 || | || ||||| ||||| || | |||||| || |||||||||||||| ||| Sbjct 1547163 TATAAATTAAACAGTTAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTAC 1547104 Query 33631 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATC 33690 ||| || | || | | | | ||||||| |||||| || | | || || Sbjct 1547103 TAAATGTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTC 1547044 Query 33691 CGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC 33750 | ||| || ||||||||||| ||| || | || ||| ||| || || Sbjct 1547043 CACTAAATAATATTCCTTCTACACATGCATTAGCTACAATTCTTTCTGCAAAAGAATTTG 1546984 Query 33751 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 | |||| |||||| || |||||| || || ||||| | | || || |||| | Sbjct 1546983 TATCATTTATCCATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAA 1546924 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 | |||| ||| | || | |||| || |||||||| |||| |||| || || | || Sbjct 1546923 TAGCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAAC 1546864 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 |||| |||| ||||| || ||||||| || || ||||| || || | | || | Sbjct 1546863 TATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTT 1546804 Query 33931 CGGTAATCTGCACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCATCA 33989 | |||| | |||||| | ||||| | || || |||||||| || ||||||||| Sbjct 1546803 CAATAATTTCTACTTCTCTTAAAAATT-TACTAGCCAAATTTTCTAATACAATTCCATCA 1546745 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 34049 || ||||||||||| || || |||||||||||||||| |||||| | ||| ||| Sbjct 1546744 CTTGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTAATTTT 1546685 Query 34050 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 34109 | |||| || | ||| | |||| ||| | |||||| ||||||||||||| || || Sbjct 1546684 TCAAAATCTTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCA 1546625 Query 34110 GCCTTTTTATACATATTCCAGATGTCATGATA 34141 || ||||| || | |||||| | ||| |||| Sbjct 1546624 GCTTTTTTGTAAAAATTCCAAACTTCAGGATA 1546593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816049074160