Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq11 646 0.0 seq2 273 2e-68 >seq11 Length=1045168 Score = 646 bits (716), Expect = 0.0 Identities = 1213/1758 (69%), Gaps = 46/1758 (3%) Strand=Plus/Minus Query 36937 TGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCC 36996 ||||| || || | || | ||| || ||||| || | |||| ||||| || ||| Sbjct 533659 TGATCAATGAAAACCCCACGGTCAGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 533600 Query 36997 CAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATC--TAA-ATGTTGAATAGAA 37053 ||||| |||||||| | || ||||| || | | || | || ||| || ||| | | Sbjct 533599 CAAACAGTTTTATACAATTCTTTTAAATCAGCAGGAATTTCACTAATATATTGTACACTT 533540 Query 37054 CCATTATGTAACA--CAATTGTATTCTTTATGTCATTATTCCACATATTTCTACTTATTA 37111 ||||| || | || ||||||| | || || || | || ||| | |||| | | Sbjct 533539 CCATTGTG-AGCAATCAATTGTTGT-TTCATATCTTCATCCCAAAGGCCTCTATCAAAAA 533482 Query 37112 GTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTAT 37171 | ||| | |||| || ||||| ||||| || || ||| |||||| | ||| || Sbjct 533481 GATCTTTTAATAAATGAGGATTAACAACAAAGAATTCACCACTTAATACACGTCTATAAT 533422 Query 37172 ATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATG 37231 | || || || ||||||||||| | || |||||||| | || ||||| || || || | Sbjct 533421 AGATGTTACTTGTATATGGTTCGAATGATTCATTATTTCCCAAAATTTGTGAAGTTGAAG 533362 Query 37232 CAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTT 37291 | || ||||| ||||||| ||||| |||||| |||||||| || | ||| | |||| Sbjct 533361 CTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTT 533302 Query 37292 TTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAAC----CACATATCATATTGT 37347 ||| | || ||||||||| | || | || | |||| || ||||||||| ||||| Sbjct 533301 TTAATAAATCCCAATCCCA-ATATTTATTATCTACTTTTACATTCCACATATCAAATTGT 533243 Query 37348 AGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCT 37407 | || |||| ||| ||||| | | ||||||| ||||| ||||| | |||| ||| Sbjct 533242 AATATCCCTTGACTTGCTGGGCTACCTTTATATGATTCATATGGTCCATGTATTTGTGCT 533183 Query 37408 AGTTCGCAACTAGA---TTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTT 37464 | ||| ||| ||| ||||| || |||||||| |||||||| || ||| | ||||| Sbjct 533182 AATTC--AAC-AGACATTTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTTATTT 533126 Query 37465 AATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAA 37524 ||| ||| ||||| || || ||| ||| | || | ||||| || || || Sbjct 533125 AATTCTTTAGCTTCATCAGATTCATATGGATATCTTAAAAGCATAAATGTGTCTGCTAAT 533066 Query 37525 CCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACT 37584 || || || || || || || |||| |||| | ||||| ||| | | |||| | | | Sbjct 533065 CCTTGTACTCCTATTCCAATAGGTCGATGTCTTTTATTTGATTTTTCAGCTTCTTTAATT 533006 Query 37585 GGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATT 37644 || |||||||| | || || ||||||| || |||| || | ||||| ||||| || Sbjct 533005 GGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAAT-ATC 532947 Query 37645 CTCAACTTGTCGAACAT-AAATACGTTATT------ATTAACAAATTTACTCAACGAAAT 37697 | | || | || || |||| | || || || ||||||||| | || | ||| Sbjct 532946 ATATAATTTTTTAAAATCAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAAT 532887 Query 37698 AGATCCTAGATTACATACAGCAACTTCATCTTCGTTAC-TAAATTGTATAATCTCTGTAC 37756 || | | |||||| ||||| |||||||| || | || ||| || || || || Sbjct 532886 TGAAGCCAAATTACAAACAGCTACTTCATCAG-GTGATGTATATTCAATTATTTCACAAC 532828 Query 37757 AGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAAT 37816 | | |||||| || |||||||||| ||||| ||||||| ||||| |||||| | || Sbjct 532827 ATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTACATGCAT 532768 Query 37817 CTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATA 37876 ||||||||| ||||| || || |||||||||| | | ||||| ||||| Sbjct 532767 CTTTATATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAATAGCAAACCATA 532708 Query 37877 AACTTCTTGCTTTAACGATCGCTTTAAttt------ttttCTTTGTTTCGTATTCTATAT 37930 || ||||| | | || | ||| ||| ||||||| ||| |||| | ||| Sbjct 532707 AA--TCTTG--TGCAAGAACAGTTTTTTTTCCTAAATTTTCTTC--TTCATATTTTGTAT 532654 Query 37931 ATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACA 37990 ||||||| | ||| || | ||||| || | ||| ||||||||||| ||||||| Sbjct 532653 ATAATTTTTCAAATTCTTCACCCCAAGATTCACTTAACCCTGGACATTCATTAGGACACA 532594 Query 37991 TTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATG 38050 |||| | ||| | | || || || ||| | || ||||||||||||||||||||| | | Sbjct 532593 TTAGTGTCCAATTTCTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAG 532534 Query 38051 CAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAA 38110 || |||||||||| | | ||| ||||||| || || ||| |||||||| || || Sbjct 532533 CATAAAATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAA 532474 Query 38111 AATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTAT 38170 | || || ||||||| ||||||||||||||||| | | | | ||| |||||| Sbjct 532473 ATTCAAAAATATCAGAATGCCATGGTTCTATATATACAGCAAAAGAACCTTTTCTTTTTC 532414 Query 38171 CACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATAC 38230 | || || |||| | ||||||| |||| | |||| | | ||||||||| || |||| || Sbjct 532413 CTCCACCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATTGGAACTAAAC 532354 Query 38231 CATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCG 38290 |||| ||| | || || | || ||||||| | || ||| ||||| ||| | Sbjct 532353 CATTTGATATACCATTAGTTCCTCTAATATAAGAATTCTGTCCTCTTATAT--CTTGTAC 532296 Query 38291 A-CAA-TCCTATTCCACCTGCATGTTTTGATA-TTAAAGCGCATTGTTTTAACGTATCAA 38347 | ||| |||||| || || || ||||| || ||||||| ||||||||||| || |||| Sbjct 532295 AGCAACTCCTATACCTCCCGCG-GTTTTACTAATTAAAGCACATTGTTTTAATGTTTCAA 532237 Query 38348 ATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCA 38407 |||||||||| ||| || || || | || || ||| ||| |||||||| || Sbjct 532236 ATATACCTTCGATAGAATCTGATTTCATAGATAATAGAAAGCAAGATGACATTTGTGGAC 532177 Query 38408 ATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAAT 38467 ||| ||||| | |||||||||||||||| |||||| |||| |||| | |||| Sbjct 532176 GTGGTGTTCCTGAATTAAATAATGTAGGAGTAGCATGTGTGAAATATTTCTGAGACATTA 532117 Query 38468 AATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCA 38527 ||| ||||||||||| | | || | |||| | || || || | ||||| |||| Sbjct 532116 AATGATATGTTTCTAAAGCTTTTTCAAGATCATCTATATGTATTCCAATTGATACTCTCA 532057 Query 38528 TTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTT 38587 ||| | ||||||||| | ||| || |||||||| || | | || ||| ||| ||| Sbjct 532056 TTAATAAATGTTGTGGACGTTCAATAATTTTATTGTTAATTCGTAATAAATATGATCTTT 531997 Query 38588 CTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTATGCTATTACATTAT 38647 |||||||||| | |||||||||| ||| | ||||||| || ||||| | |||| Sbjct 531996 CTAATGTTTTGAATCCAAAATAATCATAGTTAAAATCTCTTGTATAATCTATTTCTTTAT 531937 Query 38648 CGATTATATCTCTATGTT 38665 | |||| |||||| Sbjct 531936 TTAAACGATCTTTATGTT 531919 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 |||||||| ||||| |||| || | ||| | || ||||| | ||||| ||| ||| Sbjct 533982 TCAACTGTAAATTTAATAGCATCCGTTGCTGCTTGAGTTCTTAAGTAATATGCTCCGGTT 533923 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 ||||| ||| | ||| || |||||||||||||||| | ||||||| ||||||| || Sbjct 533922 TTTAGGCCCTTTTCCCAACCATAAAAATGCATACTGGATAATTTTGCGAATGTAGGCTTT 533863 Query 36910 TCTATATATATTGTCATTGATTG 36932 | ||| || || | | |||||| Sbjct 533862 TGTATGTAAATGTTTAGTGATTG 533840 >seq2 Length=1760775 Score = 273 bits (302), Expect = 2e-68 Identities = 631/931 (68%), Gaps = 26/931 (3%) Strand=Plus/Minus Query 11281 TTAAAAATCTATATCCGTAGAAAATA--TATTCTCTTCTTTATTTGTAAACACCCCCATC 11338 ||||||||| ||| |||||||| | |||| |||||| |||||| | Sbjct 1547501 TTAAAAATCAGTATTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGA--C 1547444 Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 |||||||| || ||||| | ||| || ||||| || || |||| || ||||| | Sbjct 1547443 TTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAA 1547384 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGA-CTTTTTCACAACCTAACTCTGTTAA 11457 ||||| | | ||||| || | || | |||| | |||| ||| ||||| | ||| Sbjct 1547383 TCCATCCAATTGAAAGGGTTTT-TAGAATGAAAAACTTTAGAACATCCTAAACATTCTAA 1547325 Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517 ||||||||| || || ||||| ||||| |||||||| | | ||||||| || || | Sbjct 1547324 TAATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCATTCCAATTAA 1547265 Query 11518 ATCCACCGGAATAGCAACTGTCAAA-AACTCCT-TTTCTATATTAACCGCATCAATGATT 11575 ||| || | || | | |||| || | | |||||| | ||| || || | | | Sbjct 1547264 ATCACAAGGTAAAG--ATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACT 1547207 Query 11576 ATCGACGTT--ATAACTTCCTTAGATGGTGGATGT---AATAAATGTTTAAACATTAAAC 11630 || | || | ||| | | | | | || | |||||| || | ||||||| Sbjct 1547206 AT--ATTTTGAACAACATTTTCTGGTAATTTATTTTCTAATAAAC---TATAAATTAAAC 1547152 Query 11631 ACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATC 11690 | ||||||| ||||||||| || || ||||| |||| ||||||| ||||||||| | Sbjct 1547151 AGTTAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAAATGTTAAAC 1547092 Query 11691 CGGGCA-TCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 | | | | || | ||||||| | |||||| || ||| ||| ||| ||| ||| Sbjct 1547091 CATGTAATTTATTTT-GTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAAT 1547033 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT-ACCTTGTTGCTAGATAT 11808 ||||| || ||| |||| ||||| | ||||||| || | | |||| | | ||| Sbjct 1547032 ATTCCTTCTACACATGCATTAGCTACAATTCTTTCTGCAAAAGAATTTGTATC-ATTTAT 1546974 Query 11809 CCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAA 11868 |||||| ||||| ||||| ||||| | | || |||| ||||| | ||| Sbjct 1546973 CCATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAATAGCATGAAA 1546914 Query 11869 TAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTC 11928 ||||| | | ||||| | | |||| | | ||| |||| |||||||||||||| |||| Sbjct 1546913 TAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTTTC 1546854 Query 11929 TGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTG 11988 ||||| |||||||| | |||||||||||| ||| || | ||| || | | Sbjct 1546853 AGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATAATTTC 1546794 Query 11989 TACATCCACATAAAATCTTTCC-GCTAAATTCTCATTTACAATACCATCACTAGATGCAA 12047 ||| || | ||||| || | || ||||| || |||||| |||||||| | ||||| Sbjct 1546793 TACTTCT-CTTAAAAATTTACTAGCCAAATTTTCTAATACAATTCCATCACTTGCTGCAA 1546735 Query 12048 AAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCAT 12107 ||||||||| | |||||||||||| | |||||| | | ||||||| || |||| | Sbjct 1546734 AAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTAATTTTTCAAAATCTT 1546675 Query 12108 CTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTAT 12167 ||||| | |||||||| | ||||||| | |||||||| || | | || ||| | Sbjct 1546674 TCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTTTGT 1546615 Query 12168 ACATTTTCCAGATATCATGATACTTAATAGG 12198 | | ||||| | ||| ||||| ||||||| Sbjct 1546614 AAAAATTCCAAACTTCAGGATACATAATAGG 1546584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468523646257680