Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq11 448 6e-121 seq2 219 6e-52 >seq11 Length=1045168 Score = 448 bits (496), Expect = 6e-121 Identities = 1127/1696 (66%), Gaps = 34/1696 (2%) Strand=Plus/Minus Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 ||||| ||||| | || | ||| |||||||| | || || ||||||| ||||||| Sbjct 533659 TGATCAATGAAAACCCCACGGTCAGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 533600 Query 65040 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 65095 |||| ||||||||| || || |||| ||| | |||| | | ||| || | Sbjct 533599 CAAACAGTTTTATACAATTCTTTTAA-ATCAGCAGGAATTTCACTAATATATTGTACACT 533541 Query 65096 TCCACCATCTGCCAT-AATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 65154 |||| | || || ||| | | || || || |||| ||| | ||| || | Sbjct 533540 TCCATTGTGAGCAATCAATTGTTGT-TTCATATCTTCATCCCAAAGGCCTCTATCAAAAA 533482 Query 65155 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 65214 | || | | | ||| |||||||| || ||||| ||| ||||| | | | | Sbjct 533481 GATCTTTTAATAAATGAGGATTAACAACAAAGAATTCACCACTTAATACACGTCTATAAT 533422 Query 65215 AAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 65274 | || ||||| ||||| ||||| | || |||||||||||||||||||| | |||||| | Sbjct 533421 AGATGTTACTTGTATATGGTTCGAATGATTCATTATTTCCCAAAATTTGTGAAGTTGAAG 533362 Query 65275 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTT 65334 | || ||||||||||| | | | | |||||| | || | | || ||||| | || Sbjct 533361 CTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTT 533302 Query 65335 TTAGAGGTTCCCAATTCCAAAGATCCGACGGTACA---ACNNNNNNNNNNNNNNNTTGTA 65391 ||| ||||||| |||| | ||| || ||||| Sbjct 533301 TTAATAAATCCCAATCCCAATATTTATTATCTACTTTTACATTCCACATATCAAATTGTA 533242 Query 65392 GAATACCGTTACTGGCGTACGAT-CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT 65450 || || | ||| || | | | ||| ||||| || |||||||| | | | ||| Sbjct 533241 ATATCCCTTGACTTGC-TGGGCTACCTTTATATGATTCATATGGTCCATGTATTTGTGCT 533183 Query 65451 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGA 65510 | |||| | | ||||| || | ||||| || ||||| || || | ||||||| Sbjct 533182 AATTCAACAGACATTTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTTATTTAAT 533123 Query 65511 TCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATC 65568 |||| ||||| ||| | || ||||||| |||| || ||||| | ||||||||||| Sbjct 533122 TCTTTAGCTTCATCAGATT--CATATGGATATCTTAAAAGCATAAATGTGTCTGCTAATC 533065 Query 65569 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAG 65628 |||| || || || || ||||||| |||||| ||||| || ||||||||||| ||| | Sbjct 533064 CTTGTACTCCTATTCCAATAGGTCGATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTG 533005 Query 65629 GATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCT 65688 | |||||||| | || |||||||||| | |||||| ||| | ||| | ||| | Sbjct 533004 GGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCAT 532945 Query 65689 TCAGTTTGAGAAAATCAAA-----TCGCTCATCTAT-TACAAACATGTTCAATGCAACAG 65742 | ||| ||||||||| | | ||||| ||||| || ||||||| | Sbjct 532944 ATAATTTTTTAAAATCAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATTG 532885 Query 65743 ATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAA 65802 | |||| ||||||||| ||||| |||| || | ||||| ||||| ||| || | Sbjct 532884 AAGCCAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATTATTTCACAACATA 532825 Query 65803 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 65862 ||||||||| || || ||||||||||||| ||||||| || ||||| ||||| | Sbjct 532824 AATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATCTT 532765 Query 65863 TATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 65922 |||| | || |||| ||||||||| || ||| || || ||| || ||| | Sbjct 532764 TATATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAAT 532705 Query 65923 CTCGAGCCTTTATTATAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATACAATC 65979 || | || | | || ||| | || |||||| ||| ||| |||||| ||| Sbjct 532704 CTTGTGC---AAGAACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAATT 532648 Query 65980 GTTCGAACTCGTCTCCCCAAACATTGTC-CAATCCAGGACATTCATCCGGACACATCAAC 66038 ||| || || || |||| || ||| | || || |||||||||| |||||||| | Sbjct 532647 TTTCAAATTCTTCACCCC-AAGATTCACTTAACCCTGGACATTCATTAGGACACATTAGT 532589 Query 66039 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 66098 | ||| | || | || || |||| ||||||||| | |||||| | ||||| ||| | Sbjct 532588 GTCCAATTTCTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAA 532529 Query 66099 AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 66158 ||||||||||| | ||| ||| || || || ||| ||| | | ||| | || | Sbjct 532528 AATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCA 532469 Query 66159 ATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 66218 | ||||||| ||||||| ||||| | |||| || | | || | ||| ||| Sbjct 532468 AAAATATCAGAATGCCATGGTTCTATATATACAGCAAAAGAACCTTTTCTTTTTCCTCCA 532409 Query 66219 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 66278 || ||||||| |||||||| || | |||| ||||||| |||||||||| | |||||| Sbjct 532408 CCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATTT 532349 Query 66279 GATGTACCATTGGTCCCGGAGATAT-AGCTTCCACTTGCACGAATATTACTAATTGATAG 66337 ||| ||||||| || || |||| || | | | | | |||| | | | Sbjct 532348 GATATACCATTAGTTCCTCTAATATAAGAATTC-TGTCCTCTTATATCTTGTACAGCAAC 532290 Query 66338 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 66397 ||||| || || || ||||| ||||| || ||| ||||||| || ||| | || || Sbjct 532289 TCCTATACCTCCCGCGGTTTTACTAATTAAAGCACATTGTTTTAATGTTTCAAATATACC 532230 Query 66398 CTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 66456 || ||| ||| |||| | ||| |||||| || |||||||| |||| | Sbjct 532229 TTCGATAGAATCTGATTTCATAGATAA-TAGAAAGCAAGATGACATTTGTGGACGTGGTG 532171 Query 66457 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 66516 |||| | ||||||||| ||||||| ||| || || || |||| | ||| | || || | Sbjct 532170 TTCCTGAATTAAATAATGTAGGAGTAGCATGTGTGAAATATTTCTGAGACATTAAATGAT 532111 Query 66517 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 66576 | || || | |||| || | ||| | ||| ||||| | || || | |||||| | Sbjct 532110 ATGTTTCTAAAGCTTTTTCAAGATCATCTATATGTATTCCAATTGATACTCTCATTAATA 532051 Query 66577 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 66636 || || || | ||||| || || ||||| ||| || || || ||| |||| || | Sbjct 532050 AATGTTGTGGACGTTCAATAATTTTATTGTTAATTCGTAATAAATATGATCTTTCTAATG 531991 Query 66637 TTTTAAAACCAAAATA 66652 |||| || |||||||| Sbjct 531990 TTTTGAATCCAAAATA 531975 >seq2 Length=1760775 Score = 219 bits (242), Expect = 6e-52 Identities = 617/932 (66%), Gaps = 29/932 (3%) Strand=Plus/Minus Query 35802 TTATGTTTCTTTAAAAATCAACATCTAGAGAAAAA--TGATTGTCTTCTT-GAGACATAA 35858 |||| ||| |||||||||| || || |||||| | || | ||||| ||| ||||| Sbjct 1547511 TTATATTTTCTTAAAAATCAGTATTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAA 1547452 Query 35859 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATG 35918 | || ||||| || || | || | |||||| || ||||| ||||| |||| ||| | Sbjct 1547451 CACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAG 1547392 Query 35919 ATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAA-- 35976 |||| ||||| ||| ||| || || || || | ||| ||| | |||| || Sbjct 1547391 ATATTAAATCCATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAACATCCTAAAC 1547332 Query 35977 -TTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCA 36035 ||| ||| |||||||| || |||||||| |||||| ||| | |||||| Sbjct 1547331 ATTCT--AAT-AATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCA 1547275 Query 36036 TTCCTATAAGTTTAACTGG--AAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 36093 |||| || | | | || |||| |||| || |||| | ||| | || || Sbjct 1547274 TTCCAATTAAATCACAAGGTAAAGATTCACA--AATAAATGATCTTTCTACTTCAACTGC 1547217 Query 36094 GTCTGTTATAATAGATATT-----ACTGTTTCT--TCACTCGGTGGATACAATAAATGTT 36146 ||| ||| | || || || || ||||| | | | | || ||||| Sbjct 1547216 TTCT-TTA-ACTATATTTTGAACAACATTTTCTGGTAATTTATTTTCTA--ATAAAC--- 1547164 Query 36147 TAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 36206 || | || ||||| ||||| |||| |||||| || |||||||||||||| || Sbjct 1547163 TATAAATTAAACAGTTAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTAC 1547104 Query 36207 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATC 36266 ||| || | || | | | | ||||||| |||||| || | ||| || Sbjct 1547103 TAAATGTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTC 1547044 Query 36267 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC 36326 || ||| || ||||||||||| ||| || | || ||| ||| || || Sbjct 1547043 CACTAAATAATATTCCTTCTACACATGCATTAGCTACAATTCTTTCTGCAAAAGAATTTG 1546984 Query 36327 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 36386 | |||| |||||| || |||||| || || ||||| | | || || | || | Sbjct 1546983 TATCATTTATCCATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAA 1546924 Query 36387 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 36446 |||||| ||| | || | |||| || |||||||| ||| ||||||| || | || Sbjct 1546923 TAGCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAAC 1546864 Query 36447 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 36506 |||| |||| ||||| || ||||||| || |||||||| || || | | || | Sbjct 1546863 TATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTT 1546804 Query 36507 CGGTAATCTGTACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCA 36565 | |||| | ||||||| | ||||| | || || |||||||| || ||||| ||| Sbjct 1546803 CAATAATTTCTACTTCTCTTAAAAATT-TACTAGCCAAATTTTCTAATACAATTCCATCA 1546745 Query 36566 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTA 36625 || ||||||||||| || || |||||||||||||||| |||||| || ||| ||| Sbjct 1546744 CTTGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTAATTTT 1546685 Query 36626 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 36685 | |||| || | ||| | |||| ||| | |||||| ||||||||||||| || || Sbjct 1546684 TCAAAATCTTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCA 1546625 Query 36686 GCCTTTTTATACATATTCCAGATGTCATGATA 36717 || ||||| || | |||||| | ||| |||| Sbjct 1546624 GCTTTTTTGTAAAAATTCCAAACTTCAGGATA 1546593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658171179249480