Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2 257 2e-63 >seq2 Length=1760775 Score = 257 bits (284), Expect = 2e-63 Identities = 608/903 (67%), Gaps = 29/903 (3%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 ||||||||| || ||| ||||| || | || | | | | || ||||| || ||| Sbjct 1547500 TAAAAATCAGTATTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGACTTT 1547441 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 ||||| || ||||||||||||||| || || ||||| |||| | ||||| ||| Sbjct 1547440 TGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAATCC 1547381 Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAAT 13491 || ||| ||| || ||| | || ||| |||||| ||| |||| | ||||||| Sbjct 1547380 ATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAACATCCTAAACATTCTAATAAT 1547321 Query 13492 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13551 |||||||||| ||| ||||||||||||||||| | ||||||| || |||| | Sbjct 1547320 CTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCATTCCAATTAAATCA 1547261 Query 13552 ACAGGAATTATATTAGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 13610 ||| | | ||| || |||| | |||||| || || || || | ||| | Sbjct 1547260 CAAGGTAA-AGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTATATT 1547202 Query 13611 CTTAATAATGTCATTAGAAGG-AGGATATTTTAGATGTT--TAAAAATTAAACACGCAAA 13667 | || || |||| || | |||||| | || |||||||||| ||| Sbjct 1547201 TTGAACAA---CATTTTCTGGTAATTTATTTTCTAATAAACTATAAATTAAACAGTTAAA 1547145 Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-TGGCA 13726 |||| ||| | |||||||| |||||||| | ||| || ||||||||| || || | Sbjct 1547144 ATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCATGTAA 1547085 Query 13727 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 13786 | || | ||||||| |||||||| |||||| || ||| ||| |||||||| | Sbjct 1547084 TTTATTTT-GTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATTCCTT 1547026 Query 13787 CAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT--ATCCA 13844 | || ||| |||| | || |||| |||| || ||||| | || ||||| Sbjct 1547025 CTACACATGCATTAGCTACAATTCTTTCTGCAAAAGAA-----TTTGTATCATTTATCCA 1546971 Query 13845 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA 13904 ||| ||||||| | ||| ||||| ||| || |||| || |||| ||||| Sbjct 1546970 TTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAATAGCATGAAATAA 1546911 Query 13905 ATGT--TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 13962 || | || |||| ||| | || ||| || ||||||| | ||| ||||| ||||| Sbjct 1546910 ATTTAATCTTTCTTTTTCATCTTT--AATATAATTATCAATTAATAAACTATATGTTTCA 1546853 Query 13963 GAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT 14022 || ||||| ||||| | |||||| |||||| |||||| | | ||||| || | Sbjct 1546852 GAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATAATTTCT 1546793 Query 14023 ACCTCCGAGTAAAATCTTTCT-GCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAA 14081 || || ||||| || || ||||| ||||| ||||| |||||||| |||||||| Sbjct 1546792 ACTTCTCTTAAAAAT-TTACTAGCCAAATTTTCTAATACAATTCCATCACTTGCTGCAAA 1546734 Query 14082 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG---TTGAGTTTTTTCCAATC 14138 |||||| || | | ||| |||| | || | ||||||| || | ||||| |||| Sbjct 1546733 AAATGCTAAAACATGTTTTATAA---AATGTTTTTCATTGACATTTAATTTTTCAAAATC 1546677 Query 14139 GGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTT 14198 ||||| | || | ||| | ||| ||| |||||||||| ||| |||||||||| Sbjct 1546676 TTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTTT 1546617 Query 14199 ATA 14201 || Sbjct 1546616 GTA 1546614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478587621475080