Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 4e-13 >seq3 Length=1889938 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||| | || ||| ||||| | ||| || || || ||||| | | || || Sbjct 1688183 ACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTCT 1688242 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 || ||||| || |||||||| |||| |||||||| | || | |||||||| || Sbjct 1688243 AACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGA 1688302 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || |||| || | ||| ||||| | || || || | || || |||||| Sbjct 1688303 ATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTTT 1688362 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAA 43117 ||||||| ||||| ||||| |||||||||||| ||| Sbjct 1688363 CCGGTTAATGTTTTTACAAAGATTTGCATTTTCGTAA 1688399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381368684355426