Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq11 502 3e-137 seq2 190 3e-43 >seq11 Length=1045168 Score = 502 bits (556), Expect = 3e-137 Identities = 1137/1693 (67%), Gaps = 28/1693 (2%) Strand=Plus/Minus Query 70942 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 71001 ||||| ||||| | || | ||| |||||||| | || || ||||||| ||||||| Sbjct 533659 TGATCAATGAAAACCCCACGGTCAGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 533600 Query 71002 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 71057 |||| ||||||||| || || |||| ||| | |||| | | ||| || | Sbjct 533599 CAAACAGTTTTATACAATTCTTTTAA-ATCAGCAGGAATTTCACTAATATATTGTACACT 533541 Query 71058 TCCACCATCTGCAAT-AATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTA 71116 |||| | ||||| ||| | | ||| || ||||||| ||| | ||| || | Sbjct 533540 TCCATTGTGAGCAATCAATTGT-TGTTTCATATCTTCATCCCAAAGGCCTCTATCAAAAA 533482 Query 71117 AAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGT 71176 | || | | | |||||||||||| || ||||| ||| ||||| | | | | Sbjct 533481 GATCTTTTAATAAATGAGGATTAACAACAAAGAATTCACCACTTAATACACGTCTATAAT 533422 Query 71177 AAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 71236 | || ||||| ||||| ||||| | ||| |||||||||||||||||||| | |||||| | Sbjct 533421 AGATGTTACTTGTATATGGTTCGAATGATTCATTATTTCCCAAAATTTGTGAAGTTGAAG 533362 Query 71237 CAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTT 71296 | || ||||||||||| | | ||| |||||| | ||||| | ||||| | || Sbjct 533361 CTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTT 533302 Query 71297 TTAGAGATTCCCAATTCCAA-AGATCCGATGGTACA---ACNNNNNNNNNNNNNNNNNNN 71352 ||| | ||||||| |||| | | || ||| || Sbjct 533301 TTAATAAATCCCAATCCCAATATTTATTATC-TACTTTTACATTCCACATATCAAATTGT 533243 Query 71353 NNNATGCCGTTACTAGCGTATGAT-CCTGCATATGTATCGTATGGTCCTTCTTTTTCGGC 71411 || || | ||| || | | | ||| ||||| || |||||||| | | ||| || Sbjct 533242 AATATCCCTTGACTTGC-TGGGCTACCTTTATATGATTCATATGGTCCATGTATTTGTGC 533184 Query 71412 TAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAG 71471 || |||| | | ||||| ||| ||||||| || ||||| || || | ||||| | Sbjct 533183 TAATTCAACAGACATTTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTTATTTAA 533124 Query 71472 ATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCC 71531 |||| ||||| ||| ||||||| |||| || ||||| | |||||||||||| Sbjct 533123 TTCTTTAGCTTCATCAGATTCATATGGATATCTTAAAAGCATAAATGTGTCTGCTAATCC 533064 Query 71532 TTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGG 71591 ||| || || || || ||||||| ||||| ||||| || ||||||||||| ||| || Sbjct 533063 TTGTACTCCTATTCCAATAGGTCGATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTGG 533004 Query 71592 ATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGA-CCACATCCT 71650 |||||||| | || |||||||||| | |||||| | || || ||| | | ||| | Sbjct 533003 GTAATAATTTCTTTCAATAATTTTATCTAAATTTCT-AGTAATAATTTTAGTAATATCAT 532945 Query 71651 TTAGTTTGAGAAAATCAAA-----TCTCCCATCTAT-TACAAACACGTTCAAGGCAACAG 71704 || ||| ||||||||| | | ||||| ||||| | || |||| | Sbjct 532944 ATAATTTTTTAAAATCAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATTG 532885 Query 71705 ATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAA 71764 | |||| ||||||||| ||||| |||| || | ||||| || |||||| || | Sbjct 532884 AAGCCAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATTATTTCACAACATA 532825 Query 71765 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 71824 ||||||||| || || ||||||||||||| ||||||| || ||||| ||||| | Sbjct 532824 AATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATCTT 532765 Query 71825 TATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 71884 |||| | ||| | || ||||||||| || ||| || || ||| || ||| | Sbjct 532764 TATATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAAT 532705 Query 71885 CTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTT 71944 || | || | | || || | |||||| ||| |||| |||||||||| || Sbjct 532704 CTTGTGCAAGAACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAATTTTT 532645 Query 71945 CGAACTCGTCTCCCCAAGCATTGTC-TAATCCAGGACATTCATTCGGACACATCAATGAC 72003 | || || || ||||||| ||| | ||| || ||||||||||| |||||||| | || | Sbjct 532644 CAAATTCTTCACCCCAAG-ATTCACTTAACCCTGGACATTCATTAGGACACATTAGTGTC 532586 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063 || | || || || ||||||| ||||||||| | |||||| | ||||| ||| |||| Sbjct 532585 CAATTTCTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAAT 532526 Query 72064 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 72123 | |||||| | ||| || || || || ||| ||| | | ||| | || | | | Sbjct 532525 AAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAA 532466 Query 72124 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCC 72183 |||||||||||||| ||||| | |||| || | | || | ||| ||| || Sbjct 532465 ATATCAGAATGCCATGGTTCTATATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACCT 532406 Query 72184 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 72243 ||||||| |||||||| || | |||| ||||||| |||||||||| | |||||| ||| Sbjct 532405 TGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATTTGAT 532346 Query 72244 GCACCATTGGTCCCGGAGATAT-AGCTTCCACTGGCACGAATATTGCTAATTGATAGACC 72302 |||||| || || |||| || | | | | | |||| | | | || Sbjct 532345 ATACCATTAGTTCCTCTAATATAAGAATTCTGT-CCTCTTATATCTTGTACAGCAACTCC 532287 Query 72303 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 72362 ||| || || || ||||| ||||| || ||| ||||||| || ||| | || || || Sbjct 532286 TATACCTCCCGCGGTTTTACTAATTAAAGCACATTGTTTTAATGTTTCAAATATACCTTC 532227 Query 72363 TATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 72421 ||| ||| |||| | ||| |||||| || |||||||| |||| |||| Sbjct 532226 GATAGAATCTGATTTCATAGATAA-TAGAAAGCAAGATGACATTTGTGGACGTGGTGTTC 532168 Query 72422 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 72481 | | ||||||||| ||||||| ||| || || || |||| | ||||| || || || | Sbjct 532167 CTGAATTAAATAATGTAGGAGTAGCATGTGTGAAATATTTCTGAGACATTAAATGATATG 532108 Query 72482 TCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATAT 72541 | || | |||| ||| | ||| | ||||||||| | | || | |||||| | || Sbjct 532107 TTTCTAAAGCTTTTTCAAGATCATCTATATGTATTCCAATTGATACTCTCATTAATAAAT 532048 Query 72542 GCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 72601 | || || | ||||| || || || || ||| || || || ||| |||| || |||| Sbjct 532047 GTTGTGGACGTTCAATAATTTTATTGTTAATTCGTAATAAATATGATCTTTCTAATGTTT 531988 Query 72602 TAAAACCAAAATA 72614 | || |||||||| Sbjct 531987 TGAATCCAAAATA 531975 >seq2 Length=1760775 Score = 190 bits (210), Expect = 3e-43 Identities = 366/540 (68%), Gaps = 0/540 (0%) Strand=Plus/Minus Query 42085 ACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTT 42144 ||||||||| |||||||||||||| || ||| || | || | | | | || Sbjct 1547132 ACCCTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCATGTAATTTATTTTGTTT 1547073 Query 42145 TTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAA 42204 ||||| |||||| || | ||| |||| ||| || ||||||||||| ||| Sbjct 1547072 TTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATTCCTTCTACACATGCATT 1547013 Query 42205 GGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGC 42264 || | || ||| ||| || || | |||| |||||| || |||||| || Sbjct 1547012 AGCTACAATTCTTTCTGCAAAAGAATTTGTATCATTTATCCATTTAGCAGCCCATAATGC 1546953 Query 42265 CTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACT 42324 || ||||| | | || || |||| || |||| ||| | || | |||| || Sbjct 1546952 TTTATTTTTGATAGCTGGTATATTTTCAATAGCATGAAATAAATTTAATCTTTCTTTTTC 1546893 Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| ||| |||| || || | |||||| |||| ||||| || ||||||| || Sbjct 1546892 ATCTTTAATATAATTATCAATTAATAAACTATATGTTTCAGAATGTATATTTTCAACAGC 1546833 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || ||||| || || | | || || ||| | ||||||| | ||||| Sbjct 1546832 TATTTGAAAAGAATAAAATTTTTTTGCTTCAATAATTTCTACTTCTCTTAAAAATTTACT 1546773 Query 42445 AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 42504 ||| |||||||| || ||||| ||||| ||||||||||| || || ||||||||||| Sbjct 1546772 AGCCAAATTTTCTAATACAATTCCATCACTTGCTGCAAAAAATGCTAAAACATGTTTTAT 1546713 Query 42505 AAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTAC 42564 ||||| |||||| | ||||||| | |||| || | ||| | |||| ||| | Sbjct 1546712 AAAATGTTTTTCATTGACATTTAATTTTTCAAAATCTTTCAAATCGCTCGATAAATCAAT 1546653 Query 42565 TTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATA 42624 |||||| | ||||||||||| ||||| || ||||| || | |||||| | ||| |||| Sbjct 1546652 TTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTTTGTAAAAATTCCAAACTTCAGGATA 1546593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671137547319720