Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq11 235 1e-56 seq3 199 9e-46 seq2 129 1e-24 >seq11 Length=1045168 Score = 235 bits (260), Expect = 1e-56 Identities = 190/230 (83%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | |||| |||||| || |||||||| ||||||||||| ||| Sbjct 486638 ATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCA 486579 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| |||||||| ||||||| |||||| ||||||||||||| || |||||||||||| Sbjct 486578 GATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGA 486519 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||||||||| ||||| || ||||| |||||||| | |||||| |||||| Sbjct 486518 GGGATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCT 486459 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || ||||| | |||||||||||| |||||||| Sbjct 486458 ACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 486409 Score = 224 bits (248), Expect = 2e-53 Identities = 186/227 (82%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | ||||||||||| || |||||||| ||||| |||||||||||| Sbjct 486863 CCTCCTCTTAATCTTAAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGAT 486804 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || |||||||| ||||||| |||||| ||||||||||||| || ||||| |||||||| Sbjct 486803 AGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGA 486744 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 ||||| |||||||| || || || ||||| |||||||| | |||||| |||||||| Sbjct 486743 ATTCCCTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACA 486684 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || ||||| | |||||||||||| |||||||| Sbjct 486683 TCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 486637 Score = 196 bits (216), Expect = 1e-44 Identities = 165/203 (81%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | |||| |||||| || |||||||| ||||||||||| ||| Sbjct 486410 ATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCA 486351 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| |||||||| ||||||| |||||| ||||||||||||| || |||||||||||| Sbjct 486350 GATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGA 486291 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||||||||| ||||| || ||||| |||||||| | ||||| || ||| Sbjct 486290 GGAATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGCTCT 486231 Query 104510 ACCTCTAGTGTAATAGTCTTACC 104532 || || || || ||||| || || Sbjct 486230 ACATCAAGAGTTATAGTTTTTCC 486208 >seq3 Length=1889938 Score = 199 bits (220), Expect = 9e-46 Identities = 172/213 (81%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| | |||||| || || ||||| ||||||||||||||||||| ||||| || ||||| Sbjct 1688182 TACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTC 1688241 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 || ||||||||||||||||||| || |||||||||||||| |||||||||||||| || Sbjct 1688242 TAACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTG 1688301 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||| || ||||| |||||||| | || || ||||| || || || || || || || Sbjct 1688302 AATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTT 1688361 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || | |||||||||||| || |||||||| Sbjct 1688362 TCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1688394 >seq2 Length=1760775 Score = 129 bits (142), Expect = 1e-24 Identities = 351/529 (66%), Gaps = 10/529 (2%) Strand=Plus/Plus Query 268745 TACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTA 268804 |||||| | || | ||||| |||||||| | |||||| | ||| | || || || Sbjct 1546614 TACAAAAAAGCTGAAGCTTCATTTTGGACAGCTGAAGAAATTGATTTATCGAGCGATTTG 1546673 Query 268805 ATAGATTG-GAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTT 268863 | ||||| |||||||| || || | |||| | |||||| || || | || || Sbjct 1546674 AAAGATTTTGAAAAATTAAATGTCA-ATGAAAAACATTTTATAAAACATGTTTTAGCATT 1546732 Query 268864 TTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAG-TAGAGAAGTTCTGTCAAGAG- 268921 |||||||| |||||||| || || |||||| | | ||| || || | ||||| Sbjct 1546733 TTTTGCAGCAAGTGATGGAATTGTATTAGAAAATTTGGCTAGTAAATTTTT---AAGAGA 1546789 Query 268922 -GTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCA 268980 ||| | ||| |||||| | | ||||| || || |||||| | |||||||| || Sbjct 1546790 AGTAGAAATTATTGAAGCAAAAAAATTTTATTCTTTTCAAATAGCTGTTGAAAATATACA 1546849 Query 268981 TTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAG 269040 ||| || | || ||| ||||||| |||| |||||| | ||| | || |||| || Sbjct 1546850 TTCTGAAACATATAGTTTATTAATTGATAATTATATTAAAGATGAAAAAGAAAGATTAAA 1546909 Query 269041 ACTATTTTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAA 269100 ||||| | |||| || ||| | | | ||| ||| | ||||||| || Sbjct 1546910 TTTATTTCATGCTATTGAAAATATACCAGCTATCAAAAATAAAGCATTATGGGCTGCTAA 1546969 Query 269101 ATGGATAAACGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGG 269160 ||||||||| |||| ||| | |||||| | || ||| ||| ||||||||| Sbjct 1546970 ATGGATAAATGATACAAATTCTTTTGCAGAAAGAATTGTAGCTAATGCATGTGTAGAAGG 1547029 Query 269161 TATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCC 269220 ||||| ||| || |||| || || |||||||| || |||| | || | Sbjct 1547030 AATATTATTTAGTGGAAGTTTTTGTGCAATTTTTTGGTTTAA-AAAACAAAATAAATTAC 1547088 Query 269221 A-GGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACA 269268 | || ||||| || ||| ||||| || || ||||| || |||||||| Sbjct 1547089 ATGGTTTAACATTTAGTAATGAATTAATTAGTAGGGATGAGGGTTTACA 1547137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151395493798476