Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq11 138 1e-27 seq3 123 2e-23 >seq11 Length=1045168 Score = 138 bits (152), Expect = 1e-27 Identities = 184/254 (72%), Gaps = 4/254 (2%) Strand=Plus/Minus Query 94756 TAACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGA 94815 ||| | |||| |||| | | || |||||||| |||| || || || || ||||| || Sbjct 486660 TAATGTTTTTACAAAAATCTGCATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGA 486601 Query 94816 TTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCA 94873 ||| ||||| | |||||||| |||||||| | ||| || | ||||| || || Sbjct 486600 TTCTTTTTGAATATTATAATCAG--ATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCA 486543 Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 || ||||||||||| ||||| ||||| || |||||||| || | |||||| || || || Sbjct 486542 AAAATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTATCTTGAATTTTAGCTTTAACA 486483 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 | | ||| || | | || || |||| || |||||||||||||| | ||||| Sbjct 486482 TTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTT 486423 Query 94994 ACAAAGATCTGCAT 95007 ||||| |||||||| Sbjct 486422 ACAAAAATCTGCAT 486409 Score = 116 bits (128), Expect = 3e-21 Identities = 163/227 (72%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 94756 TAACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGA 94815 ||| | |||| |||| | | || |||||||| |||| || || || || ||||| || Sbjct 486432 TAATGTTTTTACAAAAATCTGCATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGA 486373 Query 94816 TTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCA 94873 ||| ||||| | |||||||| |||||||| | ||| || | ||||| || || Sbjct 486372 TTCTTTTTGAATATTATAATCAG--ATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCA 486315 Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 || ||||||||||| ||||| |||||||| |||||||| || | |||||| || || || Sbjct 486314 AAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTAGCTTTAACA 486255 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCC 94980 | | ||| |||| | || || |||| || || |||||||| Sbjct 486254 TTTTCAATAGTATCAGATGGCTCTACATCAAGAGTTATAGTTTTTCC 486208 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| |||| || || | || || || ||||| ||||| | |||||| || Sbjct 486863 CCTCCTCTTAATCTTAAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAG-- 486806 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 |||||||| | ||| || | ||||| || |||| ||||||||||| || || |||| Sbjct 486805 ATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAG 486746 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| || ||||| || | ||||| || || || | | ||| || | | || | Sbjct 486745 GAATTCCCTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTA 486686 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| || |||||||||||||| | ||||| ||||| |||||||| Sbjct 486685 CATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 486637 >seq3 Length=1889938 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC-GCTCATAGTGTTGGAATCCTC 94857 ||||| || || || || || ||||| | ||||| || | | || || || ||| || Sbjct 1688183 ACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAAT-GTTCTGCCATCTTC 1688241 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 | ||||||||| |||| ||||||||||| ||||| |||||||| |||||||| || | Sbjct 1688242 TAACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTG 1688301 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 |||||| || || || | | |||||||| | || || |||| ||||| ||||| Sbjct 1688302 AATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTT 1688361 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || | ||||| |||||||| ||||| Sbjct 1688362 TCCGGTTAATGTTTTTACAAAGATTTGCAT 1688391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290096082920