Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq6 125 1e-23 >seq6 Length=2614191 Score = 125 bits (138), Expect = 1e-23 Identities = 498/770 (65%), Gaps = 23/770 (3%) Strand=Plus/Minus Query 193437 GCATTAATAACAGGCATAACTGGGCAGGATGGATCTTATCTTGCCGAGTTTCTTTTGTCT 193496 ||||||||| || ||||| || |||||||| || ||| | ||| || ||||| | Sbjct 1007093 GCATTAATATTTGGTATAACAGGACAGGATGGGTCATATTTAAGCGAATTGCTTTTAGAT 1007034 Query 193497 AAGGGATATGAAGTTCATGGTATTGTAAGGAGAAGTTCCCTAATCAATACTCATAGAATT 193556 || ||||||||||||||||| || | |||||| || | | ||||| | ||||| Sbjct 1007033 AAAGGATATGAAGTTCATGGGGTTATTAGGAGATGTAGTACATTTAATACAAAAAGAATA 1006974 Query 193557 GATCATATCTATGAGAAGATCACTCTTCATTATGGAGATCTAACTGATCCT-GTAA-ATG 193614 |||||||| | ||| || | | | | |||||||| ||| || |||| | |||| || Sbjct 1006973 GATCATATATTTGAAAAATTAAATTTACATTATGGTGATTTACTTGATAATAGTAATATA 1006914 Query 193615 TTATGGGTGTCATTAGGGCAGTTGAACCTGCTGAGATCTATAATCTTGGTGCTCAAAGTC 193674 || | | | || | | | |||| ||| || |||||| | | ||| ||||||| Sbjct 1006913 TTTT--CTTTAATAACTAAAATAAAACCAAATGAAATATATAATTTAGCTGCACAAAGTC 1006856 Query 193675 ATGTTAAAGTTTCCTTTGAGATGCCAGAGTATACTTC-TAATGTTGATGCTTTAGGAACT 193733 |||| ||||| ||||| | || || ||||| | ||||| | ||| |||| || Sbjct 1006855 ATGTAAAAGTAAGTTTTGAATTACCTGAATATACAGCACAATGTACA-GCTATAGGTACA 1006797 Query 193734 CTTAGAATACTTGAAGCAGTTCGTATGTTGGGAATGGAGAAAGATGTTCGCATCTATCAG 193793 || |||||| | ||| || | || || || || || | | ||| | Sbjct 1006796 CTAAGAATATTAGAATCAAT---TAAATTATCAAAAATTAATAATATCAAATTTTATAAT 1006740 Query 193794 GCATCTACCAGCGAACTGTATGGTGGTGTTCTAGGCACTCCACTATCA----GAAACCAC 193849 || || || ||| | |||||| | | | | | || | ||| |||| || Sbjct 1006739 GCTTCAACATCAGAATTATATGGTAATAATATTCAAAGT-CAATGTCATAATGAAAATAC 1006681 Query 193850 ACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTGTATGGTTATTGGATCATCAA 193909 ||||||| |||| || ||||||||| ||||||| || ||| | ||| || | || Sbjct 1006680 ACCATTTAGTCCAGTTTCACCTTATGGTATAGCAAAATTATATAGCCATTATATAACAAA 1006621 Query 193910 GAATTATCGTGAGTCATATGGATTCCACGCT---AGTT-CTGGTATTCTCTTCAATCACG 193965 |||||| | || ||||| || | | | ||| |||||| | || ||||| | Sbjct 1006620 AAATTATAGAGAAGCATAT-AAT---ATGTTTTGTGTTAATGGTATATTATTTAATCATG 1006565 Query 193966 AATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACACAAGGTTTATCTAAGA 194025 | ||||||| | ||||| |||||||| || || |||||| |||| || | || | Sbjct 1006564 AGAGTCCAAGACGTGGTGAAACATTTGTTACAAAAAAAATTACAAAAGGGATAGCAAAAA 1006505 Query 194026 TCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATCTTAATGCTAAGAGGGATTGGG 194085 | | | | | || | || || | || ||| || || | || ||||||| Sbjct 1006504 TATTTAAAAAAATTCAAACTGTTATTACATTAGGAAATATTGATACATTTAGAGATTGGG 1006445 Query 194086 GACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAACAGGATGAACCCGATG 194145 | || ||||| |||||||| | || || | |||||||| ||||| | ||| | Sbjct 1006444 GTCATGCAAAAGATTATGTATATGCAATATATTTAATGTTACAACAAAAAACACCTAGCG 1006385 Query 194146 ATTATGTGATTGCTACAGGTGAACAGTATTCTGTTAGAG-ACTTTGTGAA 194194 ||| ||| ||| | | | |||| |||| ||| ||| | |||||||| Sbjct 1006384 ATTTTGTTATTTGTTCTAATCAACATCATTCAGTTCGAGAATTTTGTGAA 1006335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807553211395320