Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2 268 1e-66 >seq2 Length=1760775 Score = 268 bits (296), Expect = 1e-66 Identities = 627/939 (67%), Gaps = 21/939 (2%) Strand=Plus/Minus Query 21119 ATATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttt-tttGA--CATA 21175 |||||| ||||||||||| || ||| |||||| | | | ||||||| ||||| |||| Sbjct 1547509 ATATTTTCTTAAAAATCAGTATTTAA--AGAAAATACT-TGTTCTTTTCTTTGAGCCATA 1547453 Query 21176 ATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAAT 21235 | || ||||||||||| |||||||||||| || |||||||| ||||||| || Sbjct 1547452 ACACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAA 1547393 Query 21236 GATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGT 21295 ||||| | ||||| ||| || || |||| ||| | ||| | |||| ||| || | Sbjct 1547392 GATATTAAATCCATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAACATCCTAAA 1547333 Query 21296 TCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATA 21355 | |||||||||||| || |||||||| ||||||||| |||| | ||||||| Sbjct 1547332 CATTCTAATAATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCATT 1547273 Query 21356 CCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCA 21415 || || || | ||| | || || | ||| ||| |||||| || ||||| Sbjct 1547272 CCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCT 1547213 Query 21416 ACAATTATATTTATTATCCTAGATGTACTAGGGGGATACA----ATAATTGTTTAAACAT 21471 || |||||| || | | || | || || || | |||| || | || Sbjct 1547212 TTAACTATATT--TTGAACAACATTTTCT--GGTAATTTATTTTCTAATAAACTATAAAT 1547157 Query 21472 CAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGT 21531 ||||| ||||||| ||| ||||| ||||||||||| |||||||||||| |||||| Sbjct 1547156 TAAACAGTTAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAAATGT 1547097 Query 21532 TAAACC-GGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC-TCCTGAA 21589 |||||| | ||| || | | ||||| |||||||| |||| | |||| | ||| | Sbjct 1547096 TAAACCATGTAATTTATTTTGT-TTTTTAAACCAAAAAATTG-CACAAAAACTTCCACTA 1547039 Query 21590 AAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTA 21649 || || || || || || ||| || || | || ||| | | ||| | | || Sbjct 1547038 AATAATATTCCTTCTACACATGCATTAGCTACAATTCTTTCTGCAAA---AGAATTTGTA 1546982 Query 21650 TCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATA 21709 || ||||||||| | |||||| ||| || | ||| ||| || | |||||| Sbjct 1546981 TCATTTATCCATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAATA 1546922 Query 21710 GCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTA 21769 || | || | || | |||| | | |||| | || |||| Sbjct 1546921 GCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTA 1546862 Query 21770 TACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCT 21829 || ||||||||||||||||||| | ||||| ||||| ||||| | |||| || Sbjct 1546861 TATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCA 1546802 Query 21830 GAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTG 21889 | || || || ||||| |||||| ||||| ||| ||||||||||| Sbjct 1546801 ATAATTTCTACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACAATTCCATCACTT 1546742 Query 21890 GCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTC 21949 || ||||||||||| || | || ||||||||||| | ||| || | ||||||||| Sbjct 1546741 GCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTAATTTTTCA 1546682 Query 21950 CAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCC 22009 ||||| ||||| | |||||||| | |||||||| ||||||||| ||| ||| Sbjct 1546681 AAATCTTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCT 1546622 Query 22010 TTTTTATACATAATCCAGATATCATTATATATTATTGGA 22048 ||||| || | | |||| | ||| ||| || || ||| Sbjct 1546621 TTTTTGTAAAAATTCCAAACTTCAGGATACATAATAGGA 1546583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531899490194280