Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq11 434 1e-116 seq2 187 3e-42 >seq11 Length=1045168 Score = 434 bits (480), Expect = 1e-116 Identities = 1124/1696 (66%), Gaps = 34/1696 (2%) Strand=Plus/Minus Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195 ||||| ||||| | || | ||| |||||||| | || || ||||||| ||||||| Sbjct 533659 TGATCAATGAAAACCCCACGGTCAGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 533600 Query 62196 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 62251 |||| ||||||||| || || |||| ||| | |||| | | ||| || | Sbjct 533599 CAAACAGTTTTATACAATTCTTTTAA-ATCAGCAGGAATTTCACTAATATATTGTACACT 533541 Query 62252 TCCACCATCTGCCAT-AATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 62310 |||| | || || ||| | | || || || |||| ||| | ||| || | Sbjct 533540 TCCATTGTGAGCAATCAATTGTTGT-TTCATATCTTCATCCCAAAGGCCTCTATCAAAAA 533482 Query 62311 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 62370 | || | | | ||| |||||||| || ||||| ||| ||||| | | | | Sbjct 533481 GATCTTTTAATAAATGAGGATTAACAACAAAGAATTCACCACTTAATACACGTCTATAAT 533422 Query 62371 AAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 62430 | || ||||| ||||| ||||| | || |||||||||||||||||||| | |||||| | Sbjct 533421 AGATGTTACTTGTATATGGTTCGAATGATTCATTATTTCCCAAAATTTGTGAAGTTGAAG 533362 Query 62431 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTT 62490 | || ||||||||||| | | | | |||||| | || | | || ||||| | || Sbjct 533361 CTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTT 533302 Query 62491 TTAGAGGTTCCCAATTCCAAAGATCCGACGGTACA---ACNNNNNNNNNNNNNNNTTGTA 62547 ||| ||||||| |||| | ||| || ||||| Sbjct 533301 TTAATAAATCCCAATCCCAATATTTATTATCTACTTTTACATTCCACATATCAAATTGTA 533242 Query 62548 GAATACCGTTACTGGCGTACGAT-CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT 62606 || || | ||| || | | | ||| ||||| || |||||||| | | | ||| Sbjct 533241 ATATCCCTTGACTTGC-TGGGCTACCTTTATATGATTCATATGGTCCATGTATTTGTGCT 533183 Query 62607 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGA 62666 | |||| | | ||||| || | ||||| || ||||| || || | ||||||| Sbjct 533182 AATTCAACAGACATTTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTTATTTAAT 533123 Query 62667 TCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATC 62724 |||| ||||| ||| | || ||||||| |||| || ||||| | ||| ||||||| Sbjct 533122 TCTTTAGCTTCATCAGATT--CATATGGATATCTTAAAAGCATAAATGTGTCTGCTAATC 533065 Query 62725 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAG 62784 |||| || || || || ||||||| |||||| ||||| || ||||||||||| ||| | Sbjct 533064 CTTGTACTCCTATTCCAATAGGTCGATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTG 533005 Query 62785 GATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCT 62844 | |||||||| | || |||||||||| | |||||| ||| | ||| | ||| | Sbjct 533004 GGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCAT 532945 Query 62845 TCAGTTTGAGAAAATCAAATCGCCCAT-----CTATTA-CAAACATGTTCAAGGCAACAG 62898 | ||| |||||||||| | |||| | |||| || || |||| | Sbjct 532944 ATAATTTTTTAAAATCAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATTG 532885 Query 62899 ATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAA 62958 | |||| ||||||||| ||||| |||| || | ||||| ||||| ||| || | Sbjct 532884 AAGCCAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATTATTTCACAACATA 532825 Query 62959 GATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 63018 ||||||||| || || ||||||||||||| ||||||| || ||||| ||||| | Sbjct 532824 AATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATCTT 532765 Query 63019 TATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 63078 |||| | || |||| ||||||||| || ||| || || ||| || ||| | Sbjct 532764 TATATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAAT 532705 Query 63079 CTCGAGCCTTTATTATAGATTTGTATC---TCCTTTCTCTTTCGTATAGTGTATACAATC 63135 || | || | | || ||| | || ||||| ||| ||| |||||| ||| Sbjct 532704 CTTGTGC---AAGAACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAATT 532648 Query 63136 GTTCGAACTCGTCTCCCCAAACATTGTC-CAATCCAGGACATTCATCCGGACACATCAAC 63194 ||| || || || |||| || ||| | || || |||||||||| |||||||| | Sbjct 532647 TTTCAAATTCTTCACCCC-AAGATTCACTTAACCCTGGACATTCATTAGGACACATTAGT 532589 Query 63195 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63254 | ||| | || | || || |||| ||||||||| | |||||| | ||||| ||| | Sbjct 532588 GTCCAATTTCTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAA 532529 Query 63255 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63314 |||| |||||| | ||| ||| || || || ||| ||| | | ||| | || | Sbjct 532528 AATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCA 532469 Query 63315 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63374 | ||||||||||||||| ||||| | |||| || | | || | ||| ||| Sbjct 532468 AAAATATCAGAATGCCATGGTTCTATATATACAGCAAAAGAACCTTTTCTTTTTCCTCCA 532409 Query 63375 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63434 || ||||||| |||||||| || | |||| ||||||| |||||||||| | ||| ||| Sbjct 532408 CCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATTT 532349 Query 63435 GATATACCATTGGTACCGGAGATAT-AGCTTCCACTGGCACGAATATTACTAATTGATAG 63493 ||||||||||| || || |||| || | | | | | |||| | | | Sbjct 532348 GATATACCATTAGTTCCTCTAATATAAGAATTCTGT-CCTCTTATATCTTGTACAGCAAC 532290 Query 63494 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACC 63553 ||||| || || || ||||| ||||| || ||| ||||||| || ||| | ||||| Sbjct 532289 TCCTATACCTCCCGCGGTTTTACTAATTAAAGCACATTGTTTTAATGTTTCAAATATACC 532230 Query 63554 CTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 63612 || || ||| |||| | ||| |||||| || |||||||| |||| | Sbjct 532229 TTCGATAGAATCTGATTTCATAGATAA-TAGAAAGCAAGATGACATTTGTGGACGTGGTG 532171 Query 63613 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 63672 |||| | ||||||||| ||||||| ||| || || || |||| | ||| | || || | Sbjct 532170 TTCCTGAATTAAATAATGTAGGAGTAGCATGTGTGAAATATTTCTGAGACATTAAATGAT 532111 Query 63673 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 63732 | || || | |||| || | ||| | ||| ||||| | || || | |||||| | Sbjct 532110 ATGTTTCTAAAGCTTTTTCAAGATCATCTATATGTATTCCAATTGATACTCTCATTAATA 532051 Query 63733 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63792 || || || | ||||| || || ||||| ||| || || || ||| |||| || | Sbjct 532050 AATGTTGTGGACGTTCAATAATTTTATTGTTAATTCGTAATAAATATGATCTTTCTAATG 531991 Query 63793 TTTTAAAACCAAAATA 63808 |||| || |||||||| Sbjct 531990 TTTTGAATCCAAAATA 531975 >seq2 Length=1760775 Score = 187 bits (206), Expect = 3e-42 Identities = 599/918 (65%), Gaps = 25/918 (3%) Strand=Plus/Minus Query 32948 TTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAA--TGATTATCTTCTT-GAGACATAA 33004 |||| ||| |||||| ||| || ||||||||| | || | ||||| ||| ||||| Sbjct 1547511 TTATATTTTCTTAAAAATCAGTATTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAA 1547452 Query 33005 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATG 33064 | || ||||| || || | || | |||||| || ||||| |||||||||| || | Sbjct 1547451 CACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAG 1547392 Query 33065 ATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAA-- 33122 |||| ||||| ||| || || || || || | ||| ||| | |||| || Sbjct 1547391 ATATTAAATCCATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAACATCCTAAAC 1547332 Query 33123 -TTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCA 33181 ||| ||| |||||||| || || ||||| |||||| ||| | |||||| Sbjct 1547331 ATTCT--AAT-AATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCA 1547275 Query 33182 TTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCAT 33241 |||| || | | | || | || || || |||| | ||| | || || | Sbjct 1547274 TTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTT 1547215 Query 33242 CTGTTATAATA----GATCTAACGGTTTCT--TCACTCGGTGGATGCAATAAATGTTTAA 33295 || | | ||| || | ||| ||||| | | | | | |||||| || Sbjct 1547214 CTTTAACTATATTTTGAAC-AACATTTTCTGGTAATTTATTTTCT--AATAAAC---TAT 1547161 Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 | || ||||| ||||| || | |||||| || |||||||||| ||| || || Sbjct 1547160 AAATTAAACAGTTAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAA 1547101 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | || | || | | | | ||||||| |||||| || | | || |||| Sbjct 1547100 ATGTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCAC 1547041 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT 33475 ||| || ||||||||||| ||| || | || ||| ||| || || | | Sbjct 1547040 TAAATAATATTCCTTCTACACATGCATTAGCTACAATTCTTTCTGCAAAAGAATTTGTAT 1546981 Query 33476 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33535 ||| |||||| || |||||| || || ||||| | | || || |||| || | Sbjct 1546980 CATTTATCCATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAATAG 1546921 Query 33536 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33595 ||| ||| | || | |||| || |||||||| |||| |||| || || | ||||| Sbjct 1546920 CATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTAT 1546861 Query 33596 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33655 | |||| ||||| || ||||||| || || ||||| || || | | || || Sbjct 1546860 ATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAA 1546801 Query 33656 TAATCTGTACTTCTGTACAAAATCGTTCC--GCCAAATTTTCATTCACTATTCCGTCACT 33713 |||| | ||||||| | ||||| || | ||||||||||| || ||||| ||||| Sbjct 1546800 TAATTTCTACTTCTCTTAAAAAT--TTACTAGCCAAATTTTCTAATACAATTCCATCACT 1546743 Query 33714 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT 33773 ||||||||||| || || |||||||||||||||| |||||| | ||| ||| | Sbjct 1546742 TGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTAATTTTTC 1546683 Query 33774 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33833 |||| || | ||| | |||| ||| | |||||| ||||||||||||| || || || Sbjct 1546682 AAAATCTTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGC 1546623 Query 33834 CTTTTTATACATGTTCCA 33851 ||||| || | ||||| Sbjct 1546622 TTTTTTGTAAAAATTCCA 1546605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622945665992520