Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq11 149 2e-30 >seq11 Length=1045168 Score = 149 bits (164), Expect = 2e-30 Identities = 426/651 (65%), Gaps = 8/651 (1%) Strand=Plus/Plus Query 363382 TATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGAT 363441 |||||| ||| |||| || || | || | ||| || ||| || || || | | Sbjct 531969 TATGATTATTTTGGATTCAAAACATTAGAAAGATCATATTTATTACGAATTAACAATAAA 532028 Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 ||| ||||||| || || ||| | |||||| | || | ||||| || ||| ||| Sbjct 532029 ATTATTGAACGTCCACAACATTTATTAATGAGAGTATCAATTGGAATACATATAGATGAT 532088 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTAT---TCACGCACGCC 363558 |||| || | ||||||||| | | ||| ||| || |||| || || Sbjct 532089 CTTGAAAAAGCTTTAGAAACATATCA---TTTAATGTCTCAGAAATATTTCACACATGCT 532145 Query 363559 ACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTA 363618 || || ||| | | ||| | ||||| | |||||| ||||| ||||||||||| || Sbjct 532146 ACTCCTACATTATTTAATTCAGGAACACCACGTCCACAAATGTCATCTTGCTTTCTATTA 532205 Query 363619 AAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATT 363678 ||||| ||||| ||||| ||||| ||||| ||| | || | |||||| | ||| Sbjct 532206 TCTATGAAATCAGATTCTATCGAAGGTATATTTGAAACATTAAAACAATGTGCTTTAATT 532265 Query 363679 TCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTAC 363738 || | || || || || || || | | || || | | | |||||| ||| Sbjct 532266 AGTAAAACCGCGGGAGGTATAGGAGTTGCTGTACAAGATATAAGAGGACAGAATTCTTAT 532325 Query 363739 ATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAA 363797 ||| | || || | || ||| || ||||| | ||||| ||| | | || ||| | | Sbjct 532326 ATTAGAGGAACTAATGGTATA-TCAAATGGTTTAGTTCCAATGTTAAGAGTTTTTAATGA 532384 Query 363798 TACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCT 363857 ||| || || || || || || ||||||||||| | ||||| | |||||| | ||| | Sbjct 532385 TACAGCTAGATATGTAGATCAAGGTGGAGGAAAAAGAAAAGGTTCTTTTGCTGTATATAT 532444 Query 363858 CGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGA 363917 || || ||| | ||||||||||| ||| | || | | ||||| || ||||| Sbjct 532445 AGAACCATGGCATTCTGATATTTTTGAATTTTTAGATTTAAGAAAAAATCATGGTAAAGA 532504 Query 363918 GGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCG 363977 ||||| | || | ||| | || ||||| ||||||| |||| |||||||| | Sbjct 532505 AGAATTAAGAGCTAGAGATTTATTTTATGCTATTTGGGTACCTGATTTATTTATGAAAAG 532564 Query 363978 CGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGG 364028 || | | | || |||||| |||| | || || | ||||||||||| Sbjct 532565 AGTAAAAGAAAATAGAAATTGGACACTAATGTGTCCTAATGAATGTCCAGG 532615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303350310254054