Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq11 87.8 2e-12 >seq11 Length=1045168 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCTCATGGTGCGCGAGTCCTC 131084 |||||||||| || || || |||||||| || ||||| | | || | | | || || Sbjct 486617 ACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCA-TCTTC 486559 Query 131085 TAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGT 131144 || || || || || | ||||| | || || || ||||||||||||||||| || | Sbjct 486558 TAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTATCT-T 486500 Query 131145 GATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTT 131203 || ||| |||| | | | || | |||||||| | || | || | || | ||||| Sbjct 486499 GAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTTT 486440 Query 131204 TACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || |||| |||||||| ||||||||||| Sbjct 486439 TTCCAGTTAATGTTTTTACAAAAATCTGCAT 486409 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCTCATGGTGCGCGAGTCCTC 131084 |||| ||||| ||| || || ||||||||||| || || | | || | | | || || Sbjct 486845 ACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAGTGTTCTACCA-TCTTC 486787 Query 131085 TAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGT 131144 || || || || || | ||||| | || ||||| ||||| ||||| ||||| || Sbjct 486786 TAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCCTCTTTATCTTG 486727 Query 131145 GATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTT 131203 |||||| |||| | | | || | |||||||| | || | || | || | ||||| Sbjct 486726 GATTTTA-GCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTTT 486668 Query 131204 TACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || |||| |||||||| ||||||||||| Sbjct 486667 TTCCAGTTAATGTTTTTACAAAAATCTGCAT 486637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472011637668480