Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq12 127 1e-24 seq11 127 1e-24 seq4 127 1e-24 seq10 96.9 2e-15 seq3 86.0 4e-12 >seq12 Length=931358 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| | ||||| || |||||||| Sbjct 39565 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAAGTAGGGACAGTGGGAATCTCGT 39506 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 39505 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 39471 >seq11 Length=1045168 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| | ||||| || |||||||| Sbjct 980066 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAAGTAGGGACAGTGGGAATCTCGT 980007 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 980006 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 979972 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| ||||| || | || || ||||| | ||| || ||||||||||| ||||||| Sbjct 486637 TACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAG 486578 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | | || ||||||||||| || ||||| |||| | ||||||||| | | Sbjct 486577 ATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAG 486518 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||| || |||||| || ||||| | | |||||| ||| | Sbjct 486517 GGATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTA 486458 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || ||||| || || || ||||| || || |||||||| Sbjct 486457 CATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 486409 >seq4 Length=1882022 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| | ||||| || |||||||| Sbjct 1880731 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAAGTAGGGACAGTGGGAATCTCGT 1880672 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1880671 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1880637 >seq10 Length=1045897 Score = 96.9 bits (106), Expect = 2e-15 Identities = 79/95 (83%), Gaps = 7/95 (7%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||| ||||||||||||||||||||||||| | | ||||| | |||||||| Sbjct 831215 AAGCCCGATCCCTTGGCTGTGGTTTCGCTAGATCGCAAGTAGGGACAGTGAGAATCTCGT 831156 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| ||||||||||| ||||||| Sbjct 831155 TAATCCATTCATGCACGTCACTAATT--ATGACGA 831123 >seq3 Length=1889938 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||||||| | || ||| ||||||||||| || ||||| || | | || ||| Sbjct 1688183 ACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTCT 1688242 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 || |||||||| ||||| |||| | ||||||||| | || | |||||||| || | Sbjct 1688243 AACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGA 1688302 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| || ||||| | | ||| || |||||| || | || || ||||| Sbjct 1688303 ATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTTT 1688362 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || || ||||| || || || ||||| || Sbjct 1688363 CCGGTTAATGTTTTTACAAAGATTTGCATTTT 1688394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946395812707