Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq11 448 6e-121 seq2 210 3e-49 >seq11 Length=1045168 Score = 448 bits (496), Expect = 6e-121 Identities = 1127/1696 (66%), Gaps = 34/1696 (2%) Strand=Plus/Minus Query 61991 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCC 62050 ||||| ||||| | || | ||| |||||||| | ||||| ||||||| ||||||| Sbjct 533659 TGATCAATGAAAACCCCACGGTCAGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 533600 Query 62051 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 62106 |||| ||||||||| || || |||| ||| | |||| | | ||| || | Sbjct 533599 CAAACAGTTTTATACAATTCTTTTAA-ATCAGCAGGAATTTCACTAATATATTGTACACT 533541 Query 62107 TCCACCATCTGCCAT-AATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 62165 |||| | || || ||| | | || || || |||| ||| | ||| || | Sbjct 533540 TCCATTGTGAGCAATCAATTGTTGT-TTCATATCTTCATCCCAAAGGCCTCTATCAAAAA 533482 Query 62166 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 62225 | || | | | ||| |||||||| || ||||| ||| ||||| | | | | Sbjct 533481 GATCTTTTAATAAATGAGGATTAACAACAAAGAATTCACCACTTAATACACGTCTATAAT 533422 Query 62226 AAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 62285 | || ||||| ||||| ||||| | || |||||||||||||||||||| | |||||| | Sbjct 533421 AGATGTTACTTGTATATGGTTCGAATGATTCATTATTTCCCAAAATTTGTGAAGTTGAAG 533362 Query 62286 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTT 62345 | || ||||||||||| | | | | |||||| | || | | || ||||| | || Sbjct 533361 CTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTT 533302 Query 62346 TTAGAGGTTCCCAATTCCAAAGATCCGACGGTACA---ACNNNNNNNNNNNNNNNTTGTA 62402 ||| ||||||| |||| | ||| || ||||| Sbjct 533301 TTAATAAATCCCAATCCCAATATTTATTATCTACTTTTACATTCCACATATCAAATTGTA 533242 Query 62403 GAATACCGTTACTGGCGTACGAT-CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT 62461 || || | ||| || | | | ||| ||||| || |||||||| | | | ||| Sbjct 533241 ATATCCCTTGACTTGC-TGGGCTACCTTTATATGATTCATATGGTCCATGTATTTGTGCT 533183 Query 62462 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGA 62521 | |||| | | ||||| || | ||||| || ||||| || || | ||||||| Sbjct 533182 AATTCAACAGACATTTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTTATTTAAT 533123 Query 62522 TCTTGCGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATC 62579 |||| ||||| ||| | || ||||||| |||| || ||||| | ||||||||||| Sbjct 533122 TCTTTAGCTTCATCAGATT--CATATGGATATCTTAAAAGCATAAATGTGTCTGCTAATC 533065 Query 62580 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAG 62639 |||| || || || || ||||||| |||||| ||||| || ||||||||||| ||| | Sbjct 533064 CTTGTACTCCTATTCCAATAGGTCGATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTG 533005 Query 62640 GATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCT 62699 | |||||||| | || |||||||||| | |||||| ||| | ||| | ||| | Sbjct 533004 GGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCAT 532945 Query 62700 TCAGTTTGAGAAAATCAAATCGCCCAT-----CTATTA-CAAACATGTTCAATGCAACAG 62753 | ||| |||||||||| | |||| | |||| || ||||||| | Sbjct 532944 ATAATTTTTTAAAATCAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATTG 532885 Query 62754 ATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAA 62813 | |||| ||||||||| ||||| |||| || | ||||| ||||| ||| || | Sbjct 532884 AAGCCAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATTATTTCACAACATA 532825 Query 62814 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 62873 ||||||||| || || ||||||||||||| ||||||| || ||||| ||||| | Sbjct 532824 AATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATCTT 532765 Query 62874 TATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 62933 |||| | || |||| ||||||||| || ||| || || ||| || ||| | Sbjct 532764 TATATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAAT 532705 Query 62934 CTCGAGCCTTTATTATAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATACAATC 62990 || | || | | || ||| | || |||||| ||| ||| |||||| ||| Sbjct 532704 CTTGTGC---AAGAACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAATT 532648 Query 62991 GTTCGAACTCGTCTCCCCAAACATTGTC-CAGTCCAGGACATTCATCCGGACACATCAAC 63049 ||| || || || |||| || ||| | | || |||||||||| |||||||| | Sbjct 532647 TTTCAAATTCTTCACCCC-AAGATTCACTTAACCCTGGACATTCATTAGGACACATTAGT 532589 Query 63050 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63109 | ||| | || | || || |||| ||||||||| | |||||| | ||||| ||| | Sbjct 532588 GTCCAATTTCTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAA 532529 Query 63110 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63169 |||| |||||| | ||| ||| || || || ||| ||| | | ||| | || | Sbjct 532528 AATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCA 532469 Query 63170 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63229 | ||||||||||||||| ||||| | |||| || | | || | ||| ||| Sbjct 532468 AAAATATCAGAATGCCATGGTTCTATATATACAGCAAAAGAACCTTTTCTTTTTCCTCCA 532409 Query 63230 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 63289 || ||||||| |||||||| || | |||| ||||||| |||||||||| | |||||| Sbjct 532408 CCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATTT 532349 Query 63290 GATGTACCATTGGTCCCTGAGATAT-AGCTTCCACTGGCACGAATATTACTAATTGATAG 63348 ||| ||||||| || ||| |||| || | | | | | |||| | | | Sbjct 532348 GATATACCATTAGTTCCTCTAATATAAGAATTCTGT-CCTCTTATATCTTGTACAGCAAC 532290 Query 63349 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 63408 ||||| || || || ||||| ||||| || ||| ||||||| || ||| | || || Sbjct 532289 TCCTATACCTCCCGCGGTTTTACTAATTAAAGCACATTGTTTTAATGTTTCAAATATACC 532230 Query 63409 CTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 63467 || ||| ||| |||| | ||| |||||| || |||||||| |||| | Sbjct 532229 TTCGATAGAATCTGATTTCATAGATAA-TAGAAAGCAAGATGACATTTGTGGACGTGGTG 532171 Query 63468 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGT 63527 |||| | ||||||||| ||||||| ||| || || || |||| | ||| | || || | Sbjct 532170 TTCCTGAATTAAATAATGTAGGAGTAGCATGTGTGAAATATTTCTGAGACATTAAATGAT 532111 Query 63528 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 63587 | || || | |||| || | ||| | ||| ||||| | || || | |||||| | Sbjct 532110 ATGTTTCTAAAGCTTTTTCAAGATCATCTATATGTATTCCAATTGATACTCTCATTAATA 532051 Query 63588 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63647 || || || | ||||| || || ||||| ||| || || || ||| |||| || | Sbjct 532050 AATGTTGTGGACGTTCAATAATTTTATTGTTAATTCGTAATAAATATGATCTTTCTAATG 531991 Query 63648 TTTTAAAACCAAAATA 63663 |||| || |||||||| Sbjct 531990 TTTTGAATCCAAAATA 531975 >seq2 Length=1760775 Score = 210 bits (232), Expect = 3e-49 Identities = 615/932 (66%), Gaps = 29/932 (3%) Strand=Plus/Minus Query 32305 TTATGTTTCTTTAAAAGTCAACATCTAGAGAAAAA--TGATTGTCTTCTT-GAGACATAA 32361 |||| ||| |||||| ||| || || |||||| | || | ||||| ||| ||||| Sbjct 1547511 TTATATTTTCTTAAAAATCAGTATTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAA 1547452 Query 32362 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATG 32421 | || ||||| || || | || | |||||| || ||||| ||||| |||| ||| | Sbjct 1547451 CACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAG 1547392 Query 32422 ATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAA-- 32479 |||| ||||| ||| ||| || || || || | ||| ||| | |||| || Sbjct 1547391 ATATTAAATCCATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAACATCCTAAAC 1547332 Query 32480 -TTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCA 32538 ||| ||| |||||||| || |||||||| |||||| ||| | |||||| Sbjct 1547331 ATTCT--AAT-AATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCA 1547275 Query 32539 TTCCTATAAGTTTAACTGG--AAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 32596 |||| || | | | || |||| |||| || |||| | ||| | || || Sbjct 1547274 TTCCAATTAAATCACAAGGTAAAGATTCACA--AATAAATGATCTTTCTACTTCAACTGC 1547217 Query 32597 GTCTGTTATAATAGATCTT-----ACTGTTTCT--TCACTCGGTGGATACAATAAATGTT 32649 ||| ||| | || || || || ||||| | | | | || ||||| Sbjct 1547216 TTCT-TTA-ACTATATTTTGAACAACATTTTCTGGTAATTTATTTTCTA--ATAAAC--- 1547164 Query 32650 TAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 32709 || | || ||||| ||||| |||| |||||| || |||||||||||||| || Sbjct 1547163 TATAAATTAAACAGTTAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTAC 1547104 Query 32710 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATC 32769 ||| || | || | | | | ||||||| |||||| || | ||| || Sbjct 1547103 TAAATGTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTC 1547044 Query 32770 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC 32829 || ||| || ||||||||||| ||| || | || ||| ||| || || Sbjct 1547043 CACTAAATAATATTCCTTCTACACATGCATTAGCTACAATTCTTTCTGCAAAAGAATTTG 1546984 Query 32830 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889 | |||| |||||| || |||||| || || ||||| | | || || | || | Sbjct 1546983 TATCATTTATCCATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAA 1546924 Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 32949 |||||| ||| | || | |||| || |||||||| ||| ||||||| || | || Sbjct 1546923 TAGCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAAC 1546864 Query 32950 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCT 33009 |||| |||| ||||| || ||||||| || |||||||| || || | | || | Sbjct 1546863 TATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTT 1546804 Query 33010 CGGTAATCTGTACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCA 33068 | |||| | ||||||| | ||||| | || || |||||||| || ||||| ||| Sbjct 1546803 CAATAATTTCTACTTCTCTTAAAAATT-TACTAGCCAAATTTTCTAATACAATTCCATCA 1546745 Query 33069 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 33128 || ||||||||||| || || |||||||||||||||| |||||| | ||| ||| Sbjct 1546744 CTTGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTAATTTT 1546685 Query 33129 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 33188 | |||| || | ||| | |||| ||| | |||||| ||||||||||||| || || Sbjct 1546684 TCAAAATCTTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCA 1546625 Query 33189 GCCTTTTTATACATATTCCAGATGTCATGATA 33220 || ||||| || | |||||| | ||| |||| Sbjct 1546624 GCTTTTTTGTAAAAATTCCAAACTTCAGGATA 1546593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630439681200