Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq11 136 3e-27 seq3 123 2e-23 >seq11 Length=1045168 Score = 136 bits (150), Expect = 3e-27 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| || || || || ||| |||| || | || || || | || Sbjct 486409 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 486468 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || | || |||| |||| ||| || |||||||| || || ||||| Sbjct 486469 GATACTATTGAA--AATGTTAAAGCTAAAATTCAA-GATAAAGAAGGAATCCCTCCTGAT 486525 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | |||||||| || |||||||||||||||| | | || | ||||| Sbjct 486526 CAACAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTAT 486585 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||||||||| || |||||||||| |||| |||||||||| Sbjct 486586 AATATTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGG 486635 Score = 123 bits (136), Expect = 2e-23 Identities = 151/203 (74%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 25026 GGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG---AAGCAA 25082 || ||| | || || | || || ||| | ||||| ||||| || | || |||| | Sbjct 486208 GGAAAAACTATAACTCTTGATGTAGAGCCATCTGATACTATTGAA--AATGTTAAAGCTA 486265 Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142 ||| ||| || |||||||| ||||| ||||| ||||| | | |||||||| || ||| Sbjct 486266 AAATTCAA-GATAAAGAAGGAATTCCTCCTGATCAACAAAGATTAATTTTTGCTGGGAAA 486324 Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202 ||||||||||||| | | || | ||||| ||||||||||||||||| || ||||| Sbjct 486325 CAATTAGAAGATGGTAGAACACTATCTGATTATAATATTCAAAAAGAATCAACTTTACAT 486384 Query 25203 TTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| |||| |||||||||| Sbjct 486385 TTAGTTTTAAGATTAAGAGGAGG 486407 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| || || || || ||| |||| || | || || || | || Sbjct 486637 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 486696 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || | || |||| |||| || || ||||| || ||||| |||||| Sbjct 486697 GATACTATTGAA--AATGTTAAAGCTAAAATCCAA-GATAAAGAGGGAATTCCTCCTGAC 486753 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | |||||||| || |||||||||||||||| | | || | || || Sbjct 486754 CAACAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGACTAT 486813 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||||||||| || ||||| |||| |||| |||||||||| Sbjct 486814 AACATTCAAAAAGAATCAACCTTACATCTAGTTTTAAGATTAAGAGGAGG 486863 >seq3 Length=1889938 Score = 123 bits (136), Expect = 2e-23 Identities = 157/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| |||||||| || || ||||| ||| | ||||| | || || || | || Sbjct 1688392 AATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATC 1688333 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||| || | || |||| |||| ||| || |||||||| ||||| ||||| Sbjct 1688332 TGACACTATTGAA--AATGTTAAAGCTAAAATTCAA-GATAAAGAAGGAATTCCTCCTGA 1688276 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| | | |||||||| || ||||| |||||||||| | || | || || Sbjct 1688275 TCAACAAAGATTAATTTTTGCTGGAAAACAGTTAGAAGATGGCAGAACATTATCTGACTA 1688216 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||||||||||||| || || ||||||| || Sbjct 1688215 TAATATTCAAAAAGAGTCAACCTTACATTTGGT 1688183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326959606555