Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2 226 3e-54 >seq2 Length=1760775 Score = 226 bits (250), Expect = 3e-54 Identities = 575/864 (67%), Gaps = 23/864 (3%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||||| | ||||| || || ||||| ||||||||||||||||||| ||||||| Sbjct 1547456 CATAACACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTG 1547397 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 |||||||| ||| || | | ||| || || || | | | || ||||| | | Sbjct 1547396 TAAAGATATTAAATCCATCCAATTGAAAGGGTTTTTAGAATGAAAA-ACTTTAGAACATC 1547338 Query 92908 CAACTCGTAC-AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAAT 92966 | | | | | |||||||||||||| |||||||| || || |||||||| | ||| Sbjct 1547337 CTAAACATTCTAATAATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAAT 1547278 Query 92967 TCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAA--ATCTTTCTCGATTACAAC 93024 ||||||| | | | ||||| || || | || |||||||| | | |||| Sbjct 1547277 TCATTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCT--ACTTCAAC 1547220 Query 93025 GGCTTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTA 93084 |||||||| | || | | || | | | |||| ||| | | | | || | || Sbjct 1547219 TGCTTCTTTAACTATATTTTGAACAACATTTTCTGGTAATTTATTTTCTAATAAACTATA 1547160 Query 93085 CATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAA 93144 ||||| || ||| || ||||||||||| || || | || || ||||| || || Sbjct 1547159 AATTAAACAGTTAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAAA 1547100 Query 93145 TGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGa 93204 ||||||||| |||| | |||| || | |||||| |||| | |||||| ||| Sbjct 1547099 TGTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACT 1547040 Query 93205 aaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATT 93264 ||| ||||| ||||| || |||| || ||||| | ||| |||||| ||||| Sbjct 1547039 AAATAATATTCCTTCTACACATGCATTAGCTACAATTCTTTCTGCAAAA------GAATT 1546986 Query 93265 ACTGC---TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTC 93321 | | |||||||| |||||| ||||| || || ||| |||| |||| Sbjct 1546985 TGTATCATTTATCCATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTC 1546926 Query 93322 GATAGCGTTAAATAGGT--AATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAAC 93379 ||||| | ||||| | ||||| || | | |||| || || |||| ||||| Sbjct 1546925 AATAGCATGAAATAAATTTAATCTTTCTTTTTC--ATCTTTAATATAATTATCAATTAAT 1546868 Query 93380 AGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA 93439 | | ||| |||||||||| | ||| || | || ||||| || || || | | Sbjct 1546867 AAACTATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTT 1546808 Query 93440 GCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTA-CGAGATTTTCATTGACTATACC 93498 ||||| | || | |||||| ||||| | ||| | | |||||| || || || Sbjct 1546807 GCTTCAATAATTTCTACTTCTCTTAAAAATTTA-CTAGCCAAATTTTCTAATACAATTCC 1546749 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558 ||| |||||||||||| || || | ||| |||||||||||||| |||| | || | Sbjct 1546748 ATCACTTGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTAA 1546689 Query 93559 CTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGC 93618 || || |||| | ||| | || | ||| | |||||| | |||||||| || || Sbjct 1546688 TTTTTCAAAATCTTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGC 1546629 Query 93619 TTCTGCTTTTTTGTACATATCCCA 93642 ||| ||||||||||| | || ||| Sbjct 1546628 TTCAGCTTTTTTGTAAAAATTCCA 1546605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556859428730280