Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq3 141 2e-28 seq11 140 6e-28 >seq3 Length=1889938 Score = 141 bits (156), Expect = 2e-28 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 |||||| |||| || ||||||||||| || ||||| || || | ||| || |||||||| Sbjct 1688182 TACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTC 1688241 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 |||||| || || || || || | ||||||||| || || ||||| ||||| || ||||| Sbjct 1688242 TAACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTG 1688301 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||| || || || || || || ||||| | || ||| || || | ||||| ||||| Sbjct 1688302 AATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTT 1688361 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||| || | || || || || || |||||| Sbjct 1688362 TCCGGTTAATGTTTTTACAAAGATTTGCATT 1688392 >seq11 Length=1045168 Score = 140 bits (154), Expect = 6e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || || || |||| || || |||||||| || |||||||| || ||||| || |||||| Sbjct 486620 AAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCT 486561 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| || ||||| || || || | ||||||||| || || || || ||||| || ||| Sbjct 486560 TCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTATCT 486501 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 ||||| || || || || || || || || | || |||||| || | || |||||| Sbjct 486500 TGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTT 486441 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || | || || || || |||||||| Sbjct 486440 TTTCCAGTTAATGTTTTTACAAAAATCTGCAT 486409 Score = 136 bits (150), Expect = 7e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 |||| || || |||||||| |||||||| || || ||||| || ||||||||||| || Sbjct 486839 TGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAGTGTTCTACCATCTTCTAATTGT 486780 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 ||||| || || || | |||||||||||| || ||||| || || || ||||| || || Sbjct 486779 TTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCCTCTTTATCTTGGATTTTA 486720 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 || || || || || || || | || |||||| || | || ||||||||||| || Sbjct 486719 GCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTTTTTCCAGTT 486660 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 | || || || || |||||||| Sbjct 486659 AATGTTTTTACAAAAATCTGCAT 486637 Score = 122 bits (134), Expect = 2e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || || || |||| || || |||||||| || |||||||| || ||||| || |||||| Sbjct 486392 AAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCT 486333 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| || ||||| || || || | ||||||||| || || ||||| ||||| || ||| Sbjct 486332 TCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCT 486273 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 ||||| || || || || || || || || | || ||||| || | || || ||| Sbjct 486272 TGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGCTCTACATCAAGAGTTATAGTT 486213 Query 68430 TTTCC 68434 ||||| Sbjct 486212 TTTCC 486208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921620130504840