Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq11 104 2e-17 seq3 91.5 1e-13 >seq11 Length=1045168 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||||||| | || ||||||||||||||||| || || | | || | Sbjct 486854 AATCTTAAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAGTGTTCTA 486795 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || || ||| |||| | | || ||||| ||||||||||| ||| Sbjct 486794 CCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCCTCT 486735 Query 64346 TTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGT 64404 || ||||| | |||| ||||| ||| || | ||||| | || || || | ||| Sbjct 486734 TTATCTTGGA-TTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGT 486676 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||| || || || || |||||||| ||||| ||||| Sbjct 486675 TATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 486637 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| ||| | || |||||||||||||| || ||||| | | || | Sbjct 486626 AATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTA 486567 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || || ||| |||| | | || || || ||||| ||||||||| Sbjct 486566 CCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGGATTCCTTCT 486507 Query 64346 TTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGT 64404 || ||||| | |||| ||||| ||| || | ||||| | || || || | ||| Sbjct 486506 TTATCTTG-AATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGT 486448 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||| || || || || |||||||| ||||| ||||| Sbjct 486447 TATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 486409 >seq3 Length=1889938 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||||||||| || || || | | || | | ||||| | ||| || || Sbjct 1688195 GTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTCTAACTGTTTTCCA 1688254 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| | | || || || ||||||||||||||||| ||||| | |||| ||||| Sbjct 1688255 GCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTG-AATTTTAGCTTT 1688313 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | || ||| | || || || | ||| | || || ||||| || || Sbjct 1688314 AACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGT 1688373 Query 64426 TTTTACGAAAATTTGCATTTTAATAATGATACACTTAAT 64464 |||||| || ||||||||||| ||| ||| | |||| Sbjct 1688374 TTTTACAAAGATTTGCATTTTCGTAAGTATAAAAATAAT 1688412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499643569624680