Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq11 95.1 1e-14 >seq11 Length=1045168 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 138384 GCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC 138443 ||| || |||| || | ||||||| ||||| | |||| || ||||||||||| ||||| Sbjct 486867 GCAACCTCCTCTTAATCTTAAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTC 486808 Query 138444 GCTCATAGTACGCGAG--TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCC 138501 ||||| | | || || | |||||| || | | | |||| | |||||||| Sbjct 486807 AG--ATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCA 486750 Query 138502 GGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGAC 138561 ||||| || || ||||| || |||||| ||| | | ||| | || |||| | Sbjct 486749 GGAGGAATTCCCTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATAGTATCGGATGGT 486690 Query 138562 TCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || | || | ||||| ||||| | |||||||||||||||||||| Sbjct 486689 TCTACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 486637 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 138403 AAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG--T 138460 ||||||||||||| |||| || |||||||| || || || ||||| | | | Sbjct 486620 AAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAG--ATAGTGTTCTACCAT 486563 Query 138461 CCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGT 138520 | || | |||||| || | | | |||| | ||||| || ||||| || |||||||| | Sbjct 486562 CTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTAT 486503 Query 138521 CGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 | ||| |||| | ||||| | ||| | || |||| | || || || | || | Sbjct 486502 CT-TGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATG 486444 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| ||||| | |||||||||||||||||||| Sbjct 486443 GTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 486409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261177953840