Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq11 127 2e-24 seq3 116 3e-21 >seq11 Length=1045168 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| ||| | |||||||| ||||| ||||||||||| | ||| || | Sbjct 486623 CTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCA 486564 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || |||||||| || || | || |||| ||| || || || || || ||||||||| Sbjct 486563 TCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTA 486504 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||||||||| ||| | ||| | || ||||| | || || || ||||| | Sbjct 486503 TCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATG 486444 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || |||| |||||||||||||| ||||| Sbjct 486443 GTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 486409 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||||||| | |||||||| ||||| || ||||| || | ||| || | Sbjct 486851 CTTAAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAGTGTTCTACCA 486792 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || |||||||| || || | || |||| ||| ||||| || ||||| || |||||| Sbjct 486791 TCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCCTCTTTA 486732 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||| ||||| ||| | ||| | || ||||| | || || || ||||| | Sbjct 486731 TCTTGGATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATG 486672 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || |||| |||||||||||||| ||||| Sbjct 486671 GTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 486637 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| ||| | |||||||| ||||| ||||||||||| | ||| || | Sbjct 486395 CTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCA 486336 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || |||||||| || || | || |||| ||| || || || ||||| ||||||||| Sbjct 486335 TCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTA 486276 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||||||||| ||| | ||| | || || || | ||| || || ||||| | Sbjct 486275 TCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGCTCTACATCAAGAGTTATA 486216 Query 45306 GTTTTGCC 45313 ||||| || Sbjct 486215 GTTTTTCC 486208 >seq3 Length=1889938 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 45144 GTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCT 45203 ||||| || ||||| |||||||| || | ||| | ||| || || |||||||| Sbjct 1688195 GTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTCTAACTGTTTTCCA 1688254 Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTG 45263 || | || |||| ||| || || || ||||| |||||||||||||||||||| ||| Sbjct 1688255 GCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTAGCTTTA 1688314 Query 45264 ATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTT 45323 | ||| | ||||| || | || || || ||||| | ||||| ||||||| ||| Sbjct 1688315 ACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTT 1688374 Query 45324 TTTACAAAAATTTGCAT 45340 |||||||| |||||||| Sbjct 1688375 TTTACAAAGATTTGCAT 1688391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002086942120