Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3 143 6e-29 seq11 134 3e-26 >seq3 Length=1889938 Score = 143 bits (158), Expect = 6e-29 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||||||||||||||| || || | | ||||| |||||||| | ||| || || Sbjct 1688195 GTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTCTAACTGTTTTCCA 1688254 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || | || |||||| || |||||||| |||||||| ||||||||||| || Sbjct 1688255 GCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTAGCTTTA 1688314 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || ||||| ||||| || ||| || ||||| || | || ||||| || || ||| Sbjct 1688315 ACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTT 1688374 Query 195124 TTTACGAACACTTGCATTT 195142 ||||| || | |||||||| Sbjct 1688375 TTTACAAAGATTTGCATTT 1688393 >seq11 Length=1045168 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| | || | ||| || |||||||||||||| ||||| | || || Sbjct 486630 TCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGT 486571 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | || || || || || || | || |||||| || ||||| || || Sbjct 486570 TCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGGATTCC 486511 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| ||||||||||| || || || ||||| || || || ||| || ||||| Sbjct 486510 TTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAG 486451 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || ||||| || || |||||||| || | ||||| Sbjct 486450 AGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 486409 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| || || | || || ||||||||||| || || || | || || Sbjct 486858 TCTTAATCTTAAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAGTGT 486799 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | || || || || || || | || ||||||||| |||||||| || Sbjct 486798 TCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCC 486739 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||| ||||| ||||| || || || ||||| || || || ||| || ||||| Sbjct 486738 CTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAG 486679 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || ||||| || || |||||||| || | ||||| Sbjct 486678 AGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 486637 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| | || | ||| || |||||||||||||| ||||| | || || Sbjct 486402 TCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGT 486343 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | || || || || || || | || |||||| || |||||||| || Sbjct 486342 TCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCC 486283 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| ||||||||||| || || || ||||| || || || || || ||||| Sbjct 486282 TTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGCTCTACATCAAG 486223 Query 195099 GGTAACCGTCTTTCCTG 195115 || | || ||||||| Sbjct 486222 AGTTATAGTTTTTCCTG 486206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109478799599099