Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq11 601 4e-167 seq2 336 2e-87 >seq11 Length=1045168 Score = 601 bits (666), Expect = 4e-167 Identities = 1162/1701 (68%), Gaps = 42/1701 (2%) Strand=Plus/Minus Query 47123 CTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTC 47182 ||||||||| || | || | ||||| |||||||| | |||| | |||| || || Sbjct 533660 CTGATCAATGAAAACCCCACGGTCAGCAGCCATATCAATAATATTCTTTTGCTTAATTTC 533601 Query 47183 CCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGAT---TAGTATTTTGAATAGA 47239 ||| || |||||||| | || ||| | || | || | | || ||| ||| | | Sbjct 533600 CCAAACAGTTTTATACAATTCTTTTAAATCAGCAGGAATTTCACTAATATATTGTACACT 533541 Query 47240 TCCTCCgttttctat-aatt-ttgttttttaa-ttcatttgaccaaagttttcgttcagt 47296 ||| || | || |||| |||||| || ||||| |||||| || ||| Sbjct 533540 TCCATTGTGAGCAATCAATTGTTGTTTCATATCTTCATC---CCAAAGGCCTCTATCAAA 533484 Query 47297 taatgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCT 47356 | |||||| | |||||||||||||| ||||| ||| || ||| ||| || Sbjct 533483 AAGATCTTTTAATAAATGAGGATTAACAACAAAGAATTCACCACTTAATAC---ACGTCT 533427 Query 47357 ATAT---ATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGT 47413 ||| || ||||||||||||||||| | |||||||||||||| |||||||| | ||| Sbjct 533426 ATAATAGATGTTACTTGTATATGGTTCGAATGATTCATTATTTCCCAAAATTTGTGAAGT 533367 Query 47414 TGATGCTGTAGGCATGGATGCAACTAATAAGCTA-TTTCTTACTCCATATTTTTGTATCT 47472 ||| ||||| ||||| | ||| | || ||| | ||||||| ||||| | ||| | Sbjct 533366 TGAAGCTGTTGGCATAGGTGCTAA-AAGAAGAGAATTTCTTAATCCATGCATACTTATTT 533308 Query 47473 NNNNNNNNNNNNGTTTCCAATCCCAA-AGATCTGATGGAACA--ACATTCCAAAAATCAT 47529 | |||||||||| | | | || | |||||||| | |||| Sbjct 533307 TTTTTTTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTACATTCCACATATCAA 533248 Query 47530 ATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTT 47589 |||| | || |||| |||| || ||| ||||||| || ||| || || | || || Sbjct 533247 ATTGTAATATCCCTTGACTTGCTGGGCTACCTTTATATGATTCATATGGTCCATGTATTT 533188 Query 47590 TAGCGAGTTCA-CA-ACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTAT 47647 || | |||| || || | ||| || || |||||| ||||||||||||||| || | Sbjct 533187 GTGCTAATTCAACAGACAT--TTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTT 533130 Query 47648 GTTTAGATTCCTT-GCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTG 47706 |||| |||| || ||||| |||||| | ||||| ||||| |||| Sbjct 533129 ATTTA-ATTCTTTAGCTTCATCAGATTCATATGGATATCTTAAAAGCATAAATGTGTCTG 533071 Query 47707 CCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTG 47766 | |||||||| || || || ||||| |||| ||| ||||||| || ||||||||| Sbjct 533070 CTAATCCTTGTACTCCTATTCCAATAGGTCGATGTCTTTTATTTGATTTTTCAGCTTCTT 533011 Query 47767 GTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAA 47826 | ||| || | ||| | || |||||||||| || | || Sbjct 533010 TAATTGGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAA 532951 Query 47827 TTTCTCTTAATTTATTAAAATCAAA--CTTGTTATT---TAT-AACAAACCTATTAAGTG 47880 | || |||||| ||||||||||| ||| || || ||| |||||| | | || Sbjct 532950 TATCATATAATTTTTTAAAATCAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATG 532891 Query 47881 CTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAG 47940 | || || || | |||||| |||||||| |||| || ||||||| ||||||||| Sbjct 532890 CAATTGAAGCCAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATTATTTCAC 532831 Query 47941 CACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATG 48000 ||||| ||||| |||||| || || || ||||||| |||||| ||||||| Sbjct 532830 AACATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTACATG 532771 Query 48001 CGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCC 48060 | || || || | |||| | ||| ||||||||||| ||| || | |||| || Sbjct 532770 CATCTTTATATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAATAGCAAACC 532711 Query 48061 AAACAGTCCTAGCCTTTATAACAGCTCTAG---CTTTATTATCATGTTCGTATTTAGTAT 48117 | | | || | | | ||||| | | || ||| || | ||| ||||| |||| Sbjct 532710 ATAAA-TCTTGTGCA--AGAACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTAT 532654 Query 48118 ATAACTTCTCAAATTCATCCCCATACACATTATCT-AACCCAGGACATTCATTAGGACAC 48176 |||| || |||||||| || || | | ||| || ||||| |||||||||||||||||| Sbjct 532653 ATAATTTTTCAAATTCTTCACCCCA-AGATTCACTTAACCCTGGACATTCATTAGGACAC 532595 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 || | || ||||| || | ||||||||| ||||||||| ||| |||| ||||| | Sbjct 532594 ATTAGTGTCCAATTTCTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATA 532535 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296 || ||||||||| |||| ||||| |||||| || ||| ||| || | | || | | Sbjct 532534 GCATAAAATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAA 532475 Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTA 48356 || || | ||||||| |||||||||||||| ||||| || | |||| || ||| Sbjct 532474 AATTCAAAAATATCAGAATGCCATGGTTCTATATATACAGCAAAAGAACCTTTTCTTTTT 532415 Query 48357 TTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATA 48416 || |||||||||| |||||| || |||| ||| |||||||||||||||| || | | Sbjct 532414 CCTCCACCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATTGGAACTAAA 532355 Query 48417 CCATTTGATATACCATTGGTTCCCGAAATATAA-CTTCCACTAGCTCTTATATTACTAAT 48475 ||||||||||||||||| ||||| ||||||| | | | ||||||||| | Sbjct 532354 CCATTTGATATACCATTAGTTCCTCTAATATAAGAATTCTGT-CCTCTTATATCTTGTAC 532296 Query 48476 TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATA 48535 | || |||||||| || || ||||| |||| |||||| |||| | || ||| | Sbjct 532295 AGCAACTCCTATACCTCCCGCGGTTTTACTAATTAAAGCACATTGTTTTAATGTTTCAAA 532236 Query 48536 AATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATG 48595 || ||||| ||| ||| | ||||| ||||||||| ||| |||||||| ||| | Sbjct 532235 TATACCTTCGATAGAATCTGATTTCATAGATAATAGAAAGCAAGATGACATTTGTGGACG 532176 Query 48596 ACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAA 48655 |||||||||||||||||||| |||| ||||| | || |||||| || | || Sbjct 532175 TGGTGTTCCTGAATTAAATAATGTAGGAGTAGCATGTGTGAAATATTTCTGAGACATTAA 532116 Query 48656 TTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCAT 48715 | ||||||||| | | | || | ||| | |||||| || || ||||| | ||| Sbjct 532115 ATGATATGTTTCTAAAGCTTTTTCAAGATCATCTATATGTATTCCAATTGATACTCTCAT 532056 Query 48716 TAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTC 48775 ||| | || ||| || | ||||| |||||| || || ||| || | ||||||| |||| Sbjct 532055 TAATAAATGTTGTGGACGTTCAATAATTTTATTGTTAATTCGTAATAAATATGATCTTTC 531996 Query 48776 CAATGTTTTAAAACCAAAATA 48796 |||||||| || |||||||| Sbjct 531995 TAATGTTTTGAATCCAAAATA 531975 >seq2 Length=1760775 Score = 336 bits (372), Expect = 2e-87 Identities = 666/969 (69%), Gaps = 34/969 (4%) Strand=Plus/Minus Query 18571 GATAAAATTTTATTAT--ATTTTAGTTGATTGTTATGTTATGGTTAAAAATCAACATCCA 18628 ||||| ||||||||| | ||| || | |||| || | |||||||||| || | Sbjct 1547543 GATAATTTTTTATTATCAAATTTTTTTTTGTATTATATTTTC-TTAAAAATCAGTATTTA 1547485 Query 18629 AAGAAAAAGAAT--TCTCTTCATTAGAATTCATTACTCCCATTTTTTGATATTCGGCAAC 18686 ||||||| | ||| ||| || | ||| || || |||||||| || ||||| Sbjct 1547484 AAGAAAATACTTGTTCTTTTCTTTG--AGCCATAACACCTGACTTTTGATAATCTGCAAC 1547427 Query 18687 TCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATCAAATGG 18746 |||||||||||||||||| |||||||| | ||| ||||| | ||||| ||| || || Sbjct 1547426 TCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAATCCATCCAATTGAAAGG 1547367 Query 18747 ATTTTTTACATTATATAtttttttGAATCCTAA---TTCTAATAGTAGTCTATCCGCTAC 18803 ||||| || | | | ||| ||||||| |||||||| | ||||| || || Sbjct 1547366 GTTTTTAGAATGAAAAACTTTAGAACATCCTAAACATTCTAATAAT---CTATCAGCAAC 1547310 Query 18804 AAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTGC 18863 ||||| ||||||| ||| | |||||||||| ||||| | | ||||| | Sbjct 1547309 AAATTCAATATATTGAGACATGAGCCTTGAATTCATTCCAATTAAATCACAAGGTAAAGA 1547250 Query 18864 ATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGAT---ACAACTCT 18920 || || |||| | ||||| | ||||| ||| | ||| | ||||| | Sbjct 1547249 TTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTATATTTTGAACAACATT 1547190 Query 18921 ATCT--TCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGT 18978 ||| | ||| | | || | | || | || ||||| ||||||| |||| Sbjct 1547189 TTCTGGTAATTT--ATTTTCTAATAAAC---TATAAATTAAACAGTTAAAATCAGTATGT 1547135 Query 18979 AGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtt 19038 | ||||| || ||||| || ||||||||| ||||||||||||| | | | | | || Sbjct 1547134 AAACCCTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCATGTA--ATTTATTTT 1547077 Query 19039 tttttt--AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTG 19096 ||||| ||||| || || | | ||| |||| ||| ||||| |||||||| || Sbjct 1547076 GTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATTCCTTCTACACATG 1547017 Query 19097 CAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCC 19156 || ||| || | ||||||| || || | || ||| || |||||||| |||| Sbjct 1547016 CATTAGCTACAATTCTTTCTGCAAAA---GAATTTGTATCATTTATCCATTTAGCAGCCC 1546960 Query 19157 AATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCT 19216 | || || ||||| | | ||| || | || |||| || ||||| || | | | Sbjct 1546959 ATAATGCTTTATTTTTGATAGCTGGTATATTTTCAATAGCATGAAATAAATTTAATCTTT 1546900 Query 19217 CATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTT 19276 | | | |||||||| ||| ||| || |||||||| || |||| ||||| ||||||| Sbjct 1546899 CTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTTTCAGAATGTATATTTT 1546840 Query 19277 CTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAA 19336 | | ||| || ||||| ||||| | ||||||| | || | |||||| || ||| Sbjct 1546839 CAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATAATTTCTACTTCTCTTAAAA 1546780 Query 19337 ATCTTTCGA-CCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACA 19395 || || | | |||||||||| || ||||||||||| ||||||||||||||||| ||| Sbjct 1546779 AT-TTACTAGCCAAATTTTCTAATACAATTCCATCACTTGCTGCAAAAAATGCTAAAACA 1546721 Query 19396 TGTTTAATAAAATGTTTTTCATCTGA-GGTTAATGTATTCCAATCATTAATATCTTTAGA 19454 ||||| |||||||||||||||| ||| ||||| | | |||| || | ||| | || Sbjct 1546720 TGTTTTATAAAATGTTTTTCAT-TGACATTTAATTTTTCAAAATCTTTCAAATCGCTCGA 1546662 Query 19455 TAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATAT 19514 |||||| | ||||||| |||||||||| ||||| || |||||||| || | ||||| | Sbjct 1546661 TAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTTTGTAAAAATTCCAAAC 1546602 Query 19515 ATCACGATA 19523 ||| |||| Sbjct 1546601 TTCAGGATA 1546593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562107415807080