Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2 266 4e-66 >seq2 Length=1760775 Score = 266 bits (294), Expect = 4e-66 Identities = 593/881 (67%), Gaps = 17/881 (2%) Strand=Plus/Minus Query 36823 TTTTTTAAAAATCTTCATCTAACGTAAATTTTATTTCCTTATTACTATTCATAACTCCCA 36882 ||| ||||||||| || ||| | |||| | ||| || | | |||||| || Sbjct 1547505 TTTCTTAAAAATCAGTATTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTG 1547446 Query 36883 TTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATAT 36942 |||||||| ||| |||||| | |||| || |||||||| ||||||| || ||||| Sbjct 1547445 ACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTA 1547386 Query 36943 TTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGATAATTCCTTCA 37002 ||||| ||| || || || | || | | | || |||| ||| | ||| Sbjct 1547385 AATCCATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAACATCCTAAA-CATTCT 1547327 Query 37003 GA-AGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATT 37061 | | ||||| ||||||||||| || |||| | |||| || | || || |||||| Sbjct 1547326 AATAATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCATTCCAATT 1547267 Query 37062 AGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACT 37121 | | || | | || || |||| | |||||| | || || ||||||||| Sbjct 1547266 AAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACT 1547207 Query 37122 ATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACATGCA 37181 ||||| || ||| | ||| | | || || ||| | || | | |||||| | Sbjct 1547206 ATATTTTGAACAACATTTTCTGGTAATTTATTTTCTAATAAACTATAAATTAAACAGTTA 1547147 Query 37182 AAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGC 37241 |||||| ||||||||| ||||| ||||| || ||||||||| ||| ||||| || | Sbjct 1547146 AAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCATGT 1547087 Query 37242 ATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCT 37301 | | | | |||||||| |||||| ||||| |||| |||| ||| || || ||| Sbjct 1547086 AATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATTCCT 1547027 Query 37302 TCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAt 37361 || || |||| ||||||| | | | |||| || | |||| |||||| Sbjct 1547026 TCTACACATGCATTAGCTACAATTCTTTCTGCAAAAG---AATTTGTATCATTTATCCAT 1546970 Query 37362 ttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGA 37421 || | ||| ||| || ||| | | | || ||||||| || | || | Sbjct 1546969 TTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAATAGCATGAAATA-- 1546912 Query 37422 AAGtt--tttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAG 37479 || || | |||||| |||| | |||||| ||||||||| ||||||||| |||||| Sbjct 1546911 AATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTTTCAG 1546852 Query 37480 AGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGA- 37538 | || |||||||||| |||||| |||||| |||||| | |||||| |||||| Sbjct 1546851 AATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCA-ATAATTTCT 1546793 Query 37539 ACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAG 37598 || || | ||||| | |||| || ||||| || || |||||||| |||||||| Sbjct 1546792 ACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACAATTCCATCACTTGCTGCAAAA 1546733 Query 37599 AAAGCAAGAACATATTTTATAAAATGTCTTTCAT---CATTTGATAATTTTTTCCAATCA 37655 || || | ||||| ||||||||||||| |||||| |||| |||||||| |||| Sbjct 1546732 AATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATT---TAATTTTTCAAAATCT 1546676 Query 37656 TTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 || | ||| | |||||||||| ||| ||| | |||||||| Sbjct 1546675 TTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAA 1546635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592315341419880