Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq11 125 6e-24 seq3 91.5 1e-13 >seq11 Length=1045168 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||||||||||||||| || |||||||| || || ||||| || Sbjct 486409 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 486468 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || || |||| || || ||||| ||| | || ||||| Sbjct 486469 GATACTATTGAAAATGTTAAAGCTAAAATTCAA-GATAAAGAAGGAATCCCTCCTGATCA 486527 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| ||| | || ||||| || |||||||| |||||| || ||| | | |||||||| Sbjct 486528 ACAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAA 486587 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||||||||| ||| | || | || ||||||||| ||||||| || Sbjct 486588 TATTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGGTAT 486638 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||||||||||||||| || |||||||| || || ||||| || Sbjct 486637 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 486696 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || |||||| || ||||||||| | || || ||| Sbjct 486697 GATACTATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAGGGAATTCCTCCTGACCAA 486756 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | || ||||| || |||||||| |||||| || ||| | | || |||||| Sbjct 486757 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGACTATAAC 486816 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 |||||||||||||| || | || | || ||||||||| ||||||| Sbjct 486817 ATTCAAAAAGAATCAACCTTACATCTAGTTTTAAGATTAAGAGGAGG 486863 Score = 100 bits (110), Expect = 2e-16 Identities = 114/152 (75%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 28632 AAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCG 28691 |||| |||| || || ||||| ||| | || |||||||| ||| | || ||||| Sbjct 486260 AAGCTAAAATTCAA-GATAAAGAAGGAATTCCTCCTGATCAACAAAGATTAATTTTTGCT 486318 Query 28692 GGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACT 28751 || |||||||| |||||| || ||| | | |||||||| |||||||||||||| ||| Sbjct 486319 GGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAATATTCAAAAAGAATCAACT 486378 Query 28752 CTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 | || | || ||||||||| ||||||| || Sbjct 486379 TTACATTTAGTTTTAAGATTAAGAGGAGGTAT 486410 >seq3 Length=1889938 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 ||||||||||| ||||||||||||||||| || ||||| || || || ||||| Sbjct 1688394 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCA 1688335 Query 28611 TCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || || | | || | || || |||| || || ||||| ||| | || || Sbjct 1688334 TCTGACACTATTGAAAATGTTAAAGCTAAAATTCAA-GATAAAGAAGGAATTCCTCCTGA 1688276 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 |||||| ||| | || ||||| || ||||| || |||||| | ||| | | || || Sbjct 1688275 TCAACAAAGATTAATTTTTGCTGGAAAACAGTTAGAAGATGGCAGAACATTATCTGACTA 1688216 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| ||||||||||| || || | || ||||| || Sbjct 1688215 TAATATTCAAAAAGAGTCAACCTTACATTTGGTAATA 1688179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425403778629663