Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq6 154 2e-32 >seq6 Length=2614191 Score = 154 bits (170), Expect = 2e-32 Identities = 481/736 (65%), Gaps = 24/736 (3%) Strand=Plus/Plus Query 47796 AATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATC 47855 |||||||||||| |||| || |||||| | |||||| | || || | |||||||| Sbjct 1006374 AATAACAAAATCGCTAGGTGTTTTTTGTTGTAACATTAAATATATTGCATATACATAATC 1006433 Query 47856 TCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAA--ACAGTCTTGC 47913 | | ||||| ||||| || | || || ||||| |||||||| || ||| ||||| ||| Sbjct 1006434 TTTTGCATGACCCCAATCTCTAAATGTATCAATATTTCCTA-ATGTAATAACAGT-TTGA 1006491 Query 47914 TTACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCA 47973 | || | | ||| | || || ||||||| || || ||||| ||||||||| Sbjct 1006492 ATTTTTTTAAATATTTTTGCTATCCCTTTTGTAATTTTTTTTGTAACAAATGTTTCACCA 1006551 Query 47974 CGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCA 48033 ||||||||| ||||||||||| | |||||| || | |||| |||| ||| Sbjct 1006552 CGTCTTGGACTCTCATGATTAAATAATATACCATTAACACAAAACATATTATATGCTTCT 1006611 Query 48034 CGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGA 48093 | ||| || ||| ||| | | | ||| | |||||| | ||||||||| ||| |||| Sbjct 1006612 CTATAATTTTTTGTTATATAATGGCTATATAATTTTGCTATACCATAAGGTGAAACTGGA 1006671 Query 48094 TAGAAAGGTGTGGTCTCTGTCTG---TGGAGTCTCTTGCA---CCTTACCATAAAGTTCA 48147 || ||||| | || | || | || | ||| | |||||||| | ||| Sbjct 1006672 CTAAATGGTGTATTTTCATTATGACATTGACT---TTGAATATTATTACCATATAATTCT 1006728 Query 48148 CTGGTGGATGCTTGAT-AGATACGAACCCTATCTTCCATCTCAAGCAAACGGACTGCCTC 48206 || || || | || | || || ||| | || | || | || || Sbjct 1006729 GATGTTGAAGCATTATAAAATTTGA----TATTATTAATTTTTGATAATTTAATTGATTC 1006784 Query 48207 AAGCACTCTCAGGGTGCCTATGGCATCTGT---CTGACCAGTATACTCGGGCATCTCAAA 48263 | | ||| || || ||||| | |||| || | ||||| || || | ||||| Sbjct 1006785 TAATATTCTTAGTGTACCTAT---AGCTGTACATTGTGCTGTATATTCAGGTAATTCAAA 1006841 Query 48264 CGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGTTGAACCTGCTG 48323 || ||||||||||| ||||| | | |||||| || |||| ||||| | | Sbjct 1006842 ACTTACTTTTACATGACTTTGTGCAGCTAAATTATATATTTCATTTGGTTTTATTTTAGT 1006901 Query 48324 AATAACCCTCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCAATTTTAATTGATC 48383 || | | || ||| || || ||| || |||||||| || ||||||| || Sbjct 1006902 TATTAAAGAAAATATATTACTATTATCAAGTAAATCACCATAATGTAAATTTAATTTTTC 1006961 Query 48384 ATAAATGTGATCAATTCTATGTGTATTAATTAAAGAAGCCCGACGGACAATACCATGAAC 48443 | | || ||||| ||||| | |||||||| | | | | | | || |||||||| Sbjct 1006962 AAATATATGATCTATTCTTTTTGTATTAAATGTACTACATCTCCTAATAACCCCATGAAC 1007021 Query 48444 CTCATACCCCTTTTCAAGAAGAAGTTCTGCTAAGTATGAACCATCTTGTCCTGTAATACC 48503 ||||| || || || | ||| | ||| ||| ||||| ||||| |||||||| ||||| Sbjct 1007022 TTCATATCCTTTATCTAAAAGCAATTCGCTTAAATATGACCCATCCTGTCCTGTTATACC 1007081 Query 48504 AGTGATTAAAGCAACT 48519 | ||||| |||||| Sbjct 1007082 AAATATTAATGCAACT 1007097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665492761220040