Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2 282 6e-71 seq11 168 1e-36 seq3 158 2e-33 >seq2 Length=1760775 Score = 282 bits (312), Expect = 6e-71 Identities = 573/841 (68%), Gaps = 17/841 (2%) Strand=Plus/Minus Query 17865 TTTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAA 17923 ||||| || ||| | ||| |||| || ||||||||||| ||||||| || ||||||||| Sbjct 1547443 TTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAA 1547384 Query 17924 TTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAAT 17983 | ||| ||| || || || | | | | || ||| | ||| | |||| Sbjct 1547383 TCCATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAACATCCTAAACATTCTAAT 1547324 Query 17984 AATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGT 18043 |||||||| || |||||||| | |||||| ||||| | ||||||| || | || Sbjct 1547323 AATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCATTCCAATTAAA 1547264 Query 18044 CTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATG 18103 |||||| || ||| ||||||| | | |||| ||||| | ||||| | ||| Sbjct 1547263 TCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTATA 1547204 Query 18104 TTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAA--TAAACACG 18161 ||| || | || ||| |||||||| || | | || | ||||| |||||| Sbjct 1547203 TTTTGAACAACATTTTCTGGTAATTTATT--TTCT---AATAAACTATAAATTAAACAGT 1547149 Query 18162 CAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGG 18221 ||||||||| |||||||| ||||| || |||||||| |||||||| ||||| || Sbjct 1547148 TAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCAT 1547089 Query 18222 GCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATAC 18281 | | | || | |||||| | |||||| || | ||||| | | ||| ||||| | Sbjct 1547088 GTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATTC 1547029 Query 18282 CCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGT-ATC 18340 | || || || || |||| | |||||| |||||| | |||| | ||| | ||| Sbjct 1547028 CTTCTACACATGCATTAGCTACAATTCTTTCTGCAAAA--GAATTTGTA--TCATTTATC 1546973 Query 18341 CATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAAC 18400 ||||| |||||| | ||| ||| |||||| | || ||||||| ||| Sbjct 1546972 CATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAATAGCATGAAAT 1546913 Query 18401 AAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCA 18460 |||| | ||||||| |||||| |||||| | || ||||| ||| ||| ||||| Sbjct 1546912 AAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTTTCA 1546853 Query 18461 GAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGA 18520 |||||||| |||| | |||||| |||||| |||||| | | || || | || Sbjct 1546852 GAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATAATTTCT 1546793 Query 18521 ATCTCGCTATAAAATCTTTCTA-CCAAATTCTCATTAACTATACCGTCAGCAGATGCGAA 18579 | || || ||||| || ||| ||||||| || || || || ||| | ||| || Sbjct 1546792 ACTTCTCT-TAAAAATTTACTAGCCAAATTTTCTAATACAATTCCATCACTTGCTGCAAA 1546734 Query 18580 AAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTC-CATTCAT 18638 |||||| ||||||| ||| || |||||||||||||| | || | ||| ||| | || | Sbjct 1546733 AAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTA-ATTTTTCAAAATCTT 1546675 Query 18639 CTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGT 18698 | ||| | |||| ||||| |||||| | ||||||||| || | ||| || | ||||| Sbjct 1546674 TCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTTTGT 1546615 Query 18699 A 18699 | Sbjct 1546614 A 1546614 >seq11 Length=1045168 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | |||||||| ||||||||||| || || | || || ||| || Sbjct 486409 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 486468 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || ||| |||||| |||||||||||||| || ||||| || ||| Sbjct 486469 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATCCCTCCTGATCAA 486528 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| |||| ||| || || || | |||||| ||||| |||| ||||||||| Sbjct 486529 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAAT 486588 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || | |||||||| |||||||||||||| ||| Sbjct 486589 ATTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGGT 486636 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | |||||||| ||||||||||| || || | || || ||| || Sbjct 486637 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 486696 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || ||| |||||| ||||||||||| || || ||||| || ||| Sbjct 486697 GATACTATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAGGGAATTCCTCCTGACCAA 486756 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| |||| ||| || || || | |||||| ||||| |||| || ||||| Sbjct 486757 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGACTATAAC 486816 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || | ||| |||| |||||||||||||| ||| Sbjct 486817 ATTCAAAAAGAATCAACCTTACATCTAGTTTTAAGATTAAGAGGAGGT 486864 Score = 147 bits (162), Expect = 3e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 155850 GGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAA 155909 ||||||||||| || | || || || ||||||| |||| ||| || ||| |||| Sbjct 486208 GGAAAAACTATAACTCTTGATGTAGAGCCATCTGATACTATTGAAAATGTTAAAGCTAAA 486267 Query 155910 ATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAG 155969 || |||||||||||||| || ||||| || ||||||||||| |||| ||| || || || Sbjct 486268 ATTCAAGATAAAGAAGGAATTCCTCCTGATCAACAAAGATTAATTTTTGCTGGGAAACAA 486327 Query 155970 CTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTA 156029 | |||||| ||||| |||| ||||||||||| ||||| | || | |||||| Sbjct 486328 TTAGAAGATGGTAGAACACTATCTGATTATAATATTCAAAAAGAATCAACTTTACATTTA 486387 Query 156030 GTGTTAAGATTAAGAGGCGGT 156050 || |||||||||||||| ||| Sbjct 486388 GTTTTAAGATTAAGAGGAGGT 486408 >seq3 Length=1889938 Score = 158 bits (174), Expect = 2e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| ||| | |||||||| || |||||||| || || | || || ||| Sbjct 1688394 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCA 1688335 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | |||| ||| || ||| |||||| |||||||||||||| || ||||| || Sbjct 1688334 TCTGACACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATTCCTCCTGAT 1688275 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||||||||| |||| ||| || || ||| | |||||| |||||| ||||| || ||| Sbjct 1688274 CAACAAAGATTAATTTTTGCTGGAAAACAGTTAGAAGATGGCAGAACATTATCTGACTAT 1688215 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGT 156031 ||||| |||||| | || | ||||| || Sbjct 1688214 AATATTCAAAAAGAGTCAACCTTACATTTGGT 1688183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731870197765200