Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2 370 2e-97 seq11 221 2e-52 seq3 187 5e-42 seq5 84.2 4e-11 >seq2 Length=1760775 Score = 370 bits (410), Expect = 2e-97 Identities = 563/798 (71%), Gaps = 16/798 (2%) Strand=Plus/Minus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTC 49632 ||| ||| |||||||||| ||| ||| || || ||||| | || | || ||| | Sbjct 1547400 CTTGTAAAGATATTAAATCCATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAAC 1547341 Query 49633 CTATCAATACATA-TAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCA 49691 | || |||| |||||||||||| || |||||||||| |||||| ||||| | Sbjct 1547340 ATCCTAA-ACATTCTAATAATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTT 1547282 Query 49692 CAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttct 49751 ||||||| || | ||| | | | ||||| | ||| ||||||| | |||||| ||| Sbjct 1547281 GAATTCATTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCA 1547222 Query 49752 acagcttgtttaattatcataattatattattttttgataatttatatt-taatatgatt 49810 || |||| ||||| ||| | | | ||||| || |||||||| || ||||| | Sbjct 1547221 ACTGCTTCTTTAACTATATTTTGAACAACATTTTCTGGTAATTTATTTTCTAATAAACT- 1547163 Query 49811 cgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATT 49870 ||| |||||||| ||||||||||||||||||||| |||||| || |||||||| Sbjct 1547162 ---ATAAATTAAACAGTTAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATT 1547106 Query 49871 ACTAAAAGTTAATCC-TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAAC 49929 |||||| ||||| || || ||| || | | ||||||| |||||| |||| ||||| Sbjct 1547105 ACTAAATGTTAAACCATGTAATTTATTTTGT-TTTTTAAACCAAAAAATTGCACAAAAAC 1547047 Query 49930 TACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTA 49989 | | | ||| ||||| || || ||||| ||| |||| |||||| || ||| | | Sbjct 1547046 TTCCACTAAATAATATTCCTTCTACACATGCATTAGCTACAATTCTTTCTGCAA--AAGA 1546989 Query 49990 ATTTATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATAT 50049 |||| | ||| |||||| || |||||| |||||| |||||||||| ||||||| Sbjct 1546988 ATTTGT-ATCATTTATCCATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATAT 1546930 Query 50050 TTTCTATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTA 50109 |||| ||||| | |||||| | | |||| | |||| Sbjct 1546929 TTTCAATAGCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTA 1546870 Query 50110 ATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTC 50169 ||||| ||| |||||||||||| | ||| | |||||||||||| |||||||||| | Sbjct 1546869 ATAAACTATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTT 1546810 Query 50170 TTGCTTCTGAATA--CTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAAT 50227 ||||||| |||| | ||||| || ||| | | ||||| || ||||||| Sbjct 1546809 TTGCTTC--AATAATTTCTACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACAAT 1546752 Query 50228 ACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTT 50287 |||||| |||||| || ||||||||||| | ||| ||||||||||||||||| | || Sbjct 1546751 TCCATCACTTGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATT 1546692 Query 50288 TAAATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGA 50347 ||| ||||| || || | |||| | |||||||| | |||||| |||||||||||| Sbjct 1546691 TAATTTTTCAAAATCTTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGA 1546632 Query 50348 TGCTACGGATTTTTTATA 50365 ||| | | |||||| || Sbjct 1546631 AGCTTCAGCTTTTTTGTA 1546614 >seq11 Length=1045168 Score = 221 bits (244), Expect = 2e-52 Identities = 187/230 (81%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | | ||| |||||||||||||| | ||||| |||||||||||| Sbjct 486638 ATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCA 486579 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| ||||| |||| || |||||||| |||||||| |||||||| ||||||||||| Sbjct 486578 GATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGA 486519 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| |||||| ||| ||||| |||| ||| || | |||| Sbjct 486518 GGGATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCT 486459 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| |||||||| |||||||||||||| | ||| |||||||| Sbjct 486458 ACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 486409 Score = 190 bits (210), Expect = 4e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| ||||| | | ||| |||| |||||| || | ||||| || ||||| ||||| Sbjct 486864 ACCTCCTCTTAATCTTAAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGA 486805 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || ||||| |||| || |||||||| |||||||| |||||||| ||||| ||||| || Sbjct 486804 TAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGG 486745 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||| ||||||||||| |||||| ||| ||||| |||| ||| || | |||||| Sbjct 486744 AATTCCCTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTAC 486685 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| |||||||| |||||||||||||| | ||| |||||||| Sbjct 486684 ATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 486637 Score = 178 bits (196), Expect = 3e-39 Identities = 161/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | | ||| |||||||||||||| | ||||| |||||||||||| Sbjct 486410 ATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCA 486351 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| ||||| |||| || |||||||| |||||||| |||||||| ||||||||||| Sbjct 486350 GATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGA 486291 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| |||||| ||| ||||| |||| ||| || | ||| Sbjct 486290 GGAATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGCTCT 486231 Query 192487 ACTTCTAGAGTAATGGTTTTACC 192509 || || ||||| || ||||| || Sbjct 486230 ACATCAAGAGTTATAGTTTTTCC 486208 >seq3 Length=1889938 Score = 187 bits (206), Expect = 5e-42 Identities = 171/216 (79%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 192324 TAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATC 192383 || ||| |||||||| || | |||||| |||||||| ||||||||||||| |||| Sbjct 1688179 TATTACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATC 1688238 Query 192384 ATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATC 192443 || || ||||| |||||||| |||||||| ||||||||||| || |||||||||||||| Sbjct 1688239 TTCTAACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATC 1688298 Query 192444 TTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGT 192503 ||| |||||| ||| ||||| |||| || || | ||| || || ||||| || || Sbjct 1688299 TTGAATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGT 1688358 Query 192504 TTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| || ||||||||||| | ||| || |||||||| Sbjct 1688359 TTTTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1688394 >seq5 Length=2639166 Score = 84.2 bits (92), Expect = 4e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 129708 TAAAATATTTACATAAAATAAAAATAGTACATTGTGATTTAAAACCAGAGAATATATTA 129766 || ||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||| Sbjct 773640 TAGAATATTTACATAAAATAAATATAGTACATAGAGATTTAAAACCAGAAAATATATTA 773698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984477515110950