Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2 336 4e-87 seq11 212 1e-49 seq3 176 8e-39 seq5 84.2 4e-11 >seq2 Length=1760775 Score = 336 bits (372), Expect = 4e-87 Identities = 582/844 (69%), Gaps = 22/844 (3%) Strand=Plus/Minus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 ||||| || || | |||| ||||||| || || ||||||||||||| ||| ||||||||| Sbjct 1547443 TTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAA 1547384 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATA-TAA 38950 | ||| ||| || || ||||| | || | || ||| | | || |||| ||| Sbjct 1547383 TCCATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAACATCCTAA-ACATTCTAA 1547325 Query 38951 TAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010 ||||||||| || |||||||||| |||||| |||| | ||||||| || | ||| Sbjct 1547324 TAATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCATTCCAATTAA 1547265 Query 39011 TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat 39070 | | | ||||| | ||| ||||||| | |||||| ||| || |||| ||||| ||| Sbjct 1547264 ATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTAT 1547205 Query 39071 cataattatattattttttgataatttatatt-taatatgattcgcatataGTAAACATG 39129 | | | ||||| || |||||||| || ||||| | ||| | |||||| Sbjct 1547204 ATTTTGAACAACATTTTCTGGTAATTTATTTTCTAATAAACT----ATAAATTAAACAGT 1547149 Query 39130 CAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC-T 39188 |||||| ||||||||||| || |||||| || |||||||||||||| ||||| || | Sbjct 1547148 TAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCAT 1547089 Query 39189 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATA 39248 | ||| || | | ||||||| |||||| |||| |||||| | | ||| ||||| Sbjct 1547088 GTAATTTATTTTGT-TTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATT 1547030 Query 39249 CCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATT-TATCATCTAAAAT 39307 || || ||||| ||| |||| |||||| || |||| | | || |||||| | || Sbjct 1547029 CCTTCTACACATGCATTAGCTACAATTCTTTCTGCAAA-AGAATTTGTATCATTT---AT 1546974 Query 39308 CCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 39367 ||| || ||||| |||||| |||||||||| ||||||||||| ||||| | ||| Sbjct 1546973 CCATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAATAGCATGAAA 1546914 Query 39368 TAA--TTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATT 39425 ||| || || | ||| || Sbjct 1546913 TAAATTTAAT--CTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTT 1546856 Query 39426 TCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATA- 39484 |||||||||| | ||| | |||||||||||| |||||||||| ||||||| |||| Sbjct 1546855 TCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTC--AATAA 1546798 Query 39485 -CTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTG 39543 | ||||| || ||| | | ||||| || ||||||| |||||| ||||| Sbjct 1546797 TTTCTACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACAATTCCATCACTTGCTG 1546738 Query 39544 CGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAG 39603 | || ||||||||||||| ||| ||||||||||||||||| | ||||| ||||| || Sbjct 1546737 CAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTAATTTTTCAAAAT 1546678 Query 39604 ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTT 39663 || | |||| | |||||||| | |||||| ||||||||| || ||| | | ||||| Sbjct 1546677 CTTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTT 1546618 Query 39664 TATA 39667 | || Sbjct 1546617 TGTA 1546614 >seq11 Length=1045168 Score = 212 bits (234), Expect = 1e-49 Identities = 185/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || ||| |||||||||||||| | ||||| |||||||||||| Sbjct 486638 ATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCA 486579 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| | || | || || |||||||| ||||||||||||||||| ||||| ||||| Sbjct 486578 GATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGA 486519 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||||||||| |||||| ||| ||||| |||||||| || | |||| Sbjct 486518 GGGATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCT 486459 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| |||||||| |||||||||||||| | || |||||||| Sbjct 486458 ACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 486409 Score = 190 bits (210), Expect = 4e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| ||||| | || ||| |||| |||||| || | ||||| ||| ||||| || || Sbjct 486864 ACCTCCTCTTAATCTTAAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGA 486805 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || | || | || || |||||||| ||||||||||||||||| ||||||||||| || Sbjct 486804 TAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGG 486745 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 ||||| ||||||||||| |||||| ||| ||||| |||||||| || | |||||| Sbjct 486744 AATTCCCTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTAC 486685 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| |||||||| |||||||||||||| | || |||||||| Sbjct 486684 ATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 486637 Score = 172 bits (190), Expect = 1e-37 Identities = 160/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || ||| |||||||||||||| | ||||| |||||||||||| Sbjct 486410 ATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCA 486351 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| | || | || || |||||||| ||||||||||||||||| ||||| ||||| Sbjct 486350 GATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGA 486291 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||||||||| |||||| ||| ||||| |||||||| || | ||| Sbjct 486290 GGAATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGCTCT 486231 Query 172020 ACTTCTAGAGTAATGGTTTTACC 172042 || || ||||| || ||||| || Sbjct 486230 ACATCAAGAGTTATAGTTTTTCC 486208 >seq3 Length=1889938 Score = 176 bits (194), Expect = 8e-39 Identities = 177/230 (77%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 171857 TAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTC 171916 || ||| |||||||| || | |||||| ||||||||| || ||||| | || | || Sbjct 1688179 TATTACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATC 1688238 Query 171917 ATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATC 171976 || || ||||| ||||||||||||||||| ||||| ||||| || |||||||||||||| Sbjct 1688239 TTCTAACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATC 1688298 Query 171977 TTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGT 172036 ||| |||||| ||| ||||| ||||| || || | ||| || || ||||| || || Sbjct 1688299 TTGAATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGT 1688358 Query 172037 TTTACCAGTTAATGTTTTAATGAATATCTGCATTTT----ATTATAAAAA 172082 ||| || ||||||||||| | || || |||||||| | |||||||| Sbjct 1688359 TTTTCCGGTTAATGTTTTTACAAAGATTTGCATTTTCGTAAGTATAAAAA 1688408 >seq5 Length=2639166 Score = 84.2 bits (92), Expect = 4e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 109121 TAAAATATTTACATAAAATAAAAATAGTACATTGTGATTTAAAACCAGAGAATATATTA 109179 || ||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||| Sbjct 773640 TAGAATATTTACATAAAATAAATATAGTACATAGAGATTTAAAACCAGAAAATATATTA 773698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905133771102600