Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq11 242 1e-58 seq5 145 2e-29 seq14 116 1e-20 seq2 84.2 6e-11 >seq11 Length=1045168 Score = 242 bits (268), Expect = 1e-58 Identities = 799/1227 (65%), Gaps = 40/1227 (3%) Strand=Plus/Minus Query 155311 TTTCCAGAGCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCT 155370 |||| | ||| ||| |||| ||||| ||||| || |||||| | | |||||| || | Sbjct 533169 TTTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTTATTTAATTCTTTAGCTTCAT 533110 Query 155371 CAGATGTAAATGCGATATCCATCTTGAAA-----AATGTGTCGGCTAAACCCTGAACTCC 155425 ||||| | ||| |||||| || ||| |||||||| ||||| || || ||||| Sbjct 533109 CAGATTCATATG-GATATC----TTAAAAGCATAAATGTGTCTGCTAATCCTTGTACTCC 533055 Query 155426 AATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGT----CTTCTTGT-TTGGGTAA 155480 || || | || ||||| || | ||| || || | |||||| |||||||| Sbjct 533054 TATTCCAATAGGTCGATGTCTTTTATT-----TGATTTTTCAGCTTCTTTAATTGGGTAA 533000 Query 155481 AAATTCACATCAATAATGTTATTTAAATTTGTAACCAATACCTTGGTTACGTCTGCTAAT 155540 |||| |||||||| |||| ||||||| || | | || || | || |||| Sbjct 532999 TAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATATAAT 532940 Query 155541 TTCACATAGTCAAATG--TTTTATCCTC-ATTTACAAACATACCAAGACCAATAGACGCC 155597 || | | |||||| |||| | ||| || ||||| | | | |||| || ||| Sbjct 532939 TTTTTAAAATCAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATTGAAGCC 532880 Query 155598 AGATTACATACCGCAGTCTCCTTGTCGTCGCTGTAT--TCTACAATCTCACAGCACAGGT 155655 | |||||| || || || | | || | ||||| || | || ||||| || | | Sbjct 532879 AAATTACAAACAGCTA-CTTCATCAGGT-GATGTATATTCAATTATTTCACAACATAAAT 532822 Query 155656 TAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGT 155715 || || || || || |||||||| || || ||||||||| ||||| ||||| || | Sbjct 532821 TACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATCTTTAT 532762 Query 155716 ATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCAC 155775 ||| || ||||| || || || || || | | ||| | ||| | || Sbjct 532761 ATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAATCTT 532702 Query 155776 GGGCATTAA----TTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTT 155831 | ||| || ||| || | || | | ||| |||||||| |||| | || Sbjct 532701 GTGCAAGAACAGTTTTTTTTCCTAAATTTTC-TTCT---TCATATTTTGTATATAATTTT 532646 Query 155832 CGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGAC 155891 | || ||||| || | ||||| | || || || | || || || | || | | Sbjct 532645 TCAAATTCTTCACCCCAAGATTCACTTAACCCTGGACATTCATTAGGACACATTAGTGTC 532586 Query 155892 CAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAA 155951 ||| || |||| | |||| | | |||||||| |||| ||||||||||||| || Sbjct 532585 CAATTTCTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAAT 532526 Query 155952 AGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCA 156011 | || || || || | || || | || ||||| || | || ||||| ||||| | Sbjct 532525 AAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAA 532466 Query 156012 ATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTT---GCCACCC 156068 ||||||| ||| ||| || | ||| | ||||||| ||| || || || ||||| Sbjct 532465 ATATCAGAATGCCATGGTTCTATATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACCT 532406 Query 156069 TGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAA 156128 ||||||||||| | ||| || | ||| || || | || ||| |||| | |||||| || Sbjct 532405 TGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATTTGAT 532346 Query 156129 GTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCA 156188 | ||||| ||||| | ||||| ||| | | | || || | | | ||| Sbjct 532345 ATACCATTAGTTCCTCTAATATAAGAATTCTGTCCTCTTATATCTTGTACAGCAACTCCT 532286 Query 156189 ATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCA 156248 ||||| || | |||| |||| ||| |||| |||| || | || |||||||| Sbjct 532285 ATACCTCCCGCGGTTTTACTAATTAAAGCACATTGTTTTAATGTTTCAAATATACCTTCG 532226 Query 156249 ATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCA 156308 |||||||| || ||| |||| |||| |||| || | ||| || ||||||||||| Sbjct 532225 ATAGAATCTGATTTCATAGATAATAGAAAGCAAGATGACATTTGTGGACGTGGTGTTCCT 532166 Query 156309 GCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTC 156368 | || |||| |||||| || ||||| | ||||| || | |||||| ||| ||||| Sbjct 532165 GAATTAAATAATGTAGGAGTAGCATGTGTGAAATATTTCTGAGACATTAAATGATATGT- 532107 Query 156369 TCCTTAATC-TTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATG 156427 | || || | || ||||||| | || || | || || || ||||| | | ||| Sbjct 532106 TTCTAAAGCTTTTTCAAGATCATCTATATGTATTCCAATTGATACTCTCATTAATAAATG 532047 Query 156428 CTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTT 156487 || ||||| || | ||| | |||||| | | |||| | ||| | ||||| Sbjct 532046 TTGTGGACGTTCAATAATTTTATTGTTAATTCGTAATAAATATGATCTTTCTAATGTTTT 531987 Query 156488 AAACCCGAAATAATCAAACAGAAAATC 156514 || || ||||||||| | |||||| Sbjct 531986 GAATCCAAAATAATCATAGTTAAAATC 531960 >seq5 Length=2639166 Score = 145 bits (160), Expect = 2e-29 Identities = 233/335 (70%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 289018 CTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGT 289077 || ||||| |||||| ||||| ||||| ||||| |||| | || || | || || | Sbjct 1166104 CTTCTTTTAGAACCAACTGCATCTATTTCATCAATAAAAACAATGCAAGGTGCATGTTTT 1166163 Query 289078 CTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACA 289137 | || || ||| | ||||||| | ||| || | ||||||| |||||||| || Sbjct 1166164 TTTGCGGTTTGAAAAAGCTCTCTTATTCTTCTTGCACCTACACCAACAAACATTTCTTCA 1166223 Query 289138 AATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCC 289197 ||||| ||| | ||| |||| || || | |||||||||||||||||| | || || || Sbjct 1166224 AATTCTGAACCAGATGCTTGGATAAAAGGTACATTTGCTTCGCCTGCAATAGCTCTAGCA 1166283 Query 289198 AGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCC 289257 | | ||| || |||||||||||| || ||||| | || || || | |||||| Sbjct 1166284 ATTAATGTTTTTCCTGTTCCAGGTTCACCTGATAATAATATACCTTTGGGCAATTTTGCA 1166343 Query 289258 CCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 ||| || |||| || | | |||||| | || | ||||| | |||||| | | Sbjct 1166344 CCAATTTTAGTAAATTTATCTGAATTTTTTAAATAATCAATTATTTCTTGAAGTTCTTGT 1166403 Query 289318 TTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 ||| | || ||||| ||| |||||| || ||||| Sbjct 1166404 TTTACTTCGTCACACCCTTTTACATCTGCTAAAGT 1166438 >seq14 Length=1783079 Score = 116 bits (128), Expect = 1e-20 Identities = 322/482 (67%), Gaps = 15/482 (3%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| || || | | || | || || ||||| |||||| ||| |||||| || Sbjct 1161129 CTATCAAATCTTCCGGGTCTTGTAATAGCAGGATCTAAAATATCGATTCTATTTGTTCCT 1161070 Query 288910 GCCAATACAACAA-TAGAT--TCGGTTTGCTTAAATCCATCCATACTTGTTAAA--ATTT 288964 || || ||||| | | ||| | | | | || |||||||| || | || || | Sbjct 1161069 GCTAAAACAACTACTTGATCATTAGATGTATGGAACCCATCCAT--TTCTACAAGCATCT 1161012 Query 288965 GATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACC-CGAATCGCTCCtt 289023 |||| | || | ||| |||||||||||| || | || | ||| | | | || || Sbjct 1161011 GATTTAAAGTATTTTCTCTTTCATCATTTCCTCCACCTGCAAAACCTCCCTTTGATCTTT 1160952 Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 | || ||||||||||| ||||| || || ||||| | | | || | || || ||| || Sbjct 1160951 TCCTT-CCAACAGCATCTATTTCATCTATAAAAATAATAGATGGTGCATGTTTTCTTGCT 1160893 Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 ||||| ||||||| || | |||| ||| | || ||| ||| ||| | ||| ||| Sbjct 1160892 TGAGCAAACAATTCTCGAACTCTCGATGGTCCTATTCCTACAAACACTTCAATAAAATCA 1160833 Query 289144 --GAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAA 289201 | |||| | || || | ||||| ||||| || || || || | || | | Sbjct 1160832 CTTCCACTGATA--TTAAAAAAAGGAACATTAGCTTCTCCAGCAACAGCTTTTGCTAATA 1160775 Query 289202 GTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAG 289261 ||| || || ||||| |||| || ||||| | || ||||||| |||||| || Sbjct 1160774 ATGTTTTTCCGGTTCCCGGTGCACCACATAATAATGCACCTTTTGGTATTTTTGCACC-T 1160716 Query 289262 CAGACTT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTT 289320 | |||| |||||| | ||| | || ||||| || |||| |||| || ||| | |||| Sbjct 1160715 AATACTTGATATTTTGCTGGGTTTTTCAAAAAATCAACAAATTCCATAATTTCTTCTTTT 1160656 Query 289321 GC 289322 || Sbjct 1160655 GC 1160654 >seq2 Length=1760775 Score = 84.2 bits (92), Expect = 6e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 408942 AAGTTCTATTAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCG 409001 ||| || |||| |||||| |||||||| |||||||||||| ||||| |||||||||||| Sbjct 368140 AAGATCCATTAGCTCAGT-GGTTAGAGCGTCGGTCTTATGTACCGAAGGTCGTGGGTTCG 368082 Query 409002 AGTCCCACATAGAACATT 409019 | ||||||| || |||| Sbjct 368081 AAACCCACATGGATCATT 368064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471813885040389