Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq2 123 3e-23 seq8 87.8 2e-12 >seq2 Length=1760775 Score = 123 bits (136), Expect = 3e-23 Identities = 271/404 (67%), Gaps = 14/404 (3%) Strand=Plus/Plus Query 165952 TAAGGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAACA 166011 ||||||||||||| | ||| ||| |||||||||| | | ||| | ||||| ||| Sbjct 534514 TAAGGTTGCTCAACTTGTTGGTTATATTGCAGAACATAGTGCATATCATCATGGAGAATC 534573 Query 166012 AAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 166071 | ||| ||||||| || || | || ||| ||||||||| ||||||| ||| Sbjct 534574 ATCATTACAACAAACTATTATAAATATGGCTCAAACATTTGTTGGTTCAAATAACATAAA 534633 Query 166072 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCTGC 166131 || | ||||| ||| |||||||||| ||| |||||| ||||||||| | |||| Sbjct 534634 TTTTTTAGAACCATGTGGACAATTTGGTAGTAGAAAAGAAGGTGGTAAAGATGCATCTGC 534693 Query 166132 ATCAAGATATATTTATACCAAAC-CACATAAAATATTAAAATATATATTTAGAGAAGAAG 166190 | | || ||||| | ||| |||| ||| | | || || |||||||| ||| | | Sbjct 534694 AGCTAGGTATATATTTACAAAACTTGCATCATCCACTAGAA-GTATATTTAATGAATATG 534752 Query 166191 ATGACCCTATTTTAAATTAT---ACTGTTGAGGG---------TGAACCTATTCATTTTA 166238 |||| || |||||||| ||| | || || || ||||| ||| || Sbjct 534753 ATGATCCGATTTTAAAATATTTAAATGAAGAAGGACAAAAAATCGAACCACAATATTATA 534812 Query 166239 TTCCAGTAATCCCATTAATTTTAATTAATGGTTCTATTGGTATTGGAACAGGATGGTCAT 166298 | ||||| || ||| ||| || | ||||| | | || || ||||| |||| |||| Sbjct 534813 TACCAGTTATTCCAACGATTCTAGTAAATGGATGTGAAGGAATAGGAACTGGATATTCAT 534872 Query 166299 GTTTTATACCTCAATATAATCCTTTAGAATTAATTGATGCTATT 166342 ||||| || | |||||| | ||| ||||| || |||| Sbjct 534873 CATTTATTCCAAATTATAATTATAAAGATATAATTAATAATATT 534916 >seq8 Length=746845 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 193843 TGTTATACTGGTTATAACCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGA 193902 |||||||| || ||||| |||||||| ||| | ||| | ||| || |||||||||| || Sbjct 498951 TGTTATACAGGATATAATCAAGAAGATAGTTTAATTATGAATCAATCTTCTATTGATCGA 499010 Query 193903 GGATTATTTGGTACTATAACTTATAATACATATACAGTTGAAGAAA 193948 ||||||||| | | | || |||| ||||||||| |||||||| Sbjct 499011 GGATTATTTAGAAGTGTATTTTATCGTACATATACTAGTGAAGAAA 499056 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 194586 TAAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAAT 194645 |||||| |||||||| ||||| | ||| || | | ||||| ||||| | |||||||| Sbjct 500054 TAAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTAGAAGATAAAAT 500113 Query 194646 GCATGCTAGAAGTCATGGGCAAGTAACTA-CTTTACATCGACAACCAAATTGTGGTCGTT 194704 |||||||||||| || | |||||| ||||| | ||||||| || | | Sbjct 500114 ACATGCTAGAAGTAGAGGACCTTTAACTATGATTACA-AGGCAACCAACAGAAGGAAGAT 500172 Query 194705 CTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTG 194764 | || ||| ||| | |||||||| ||||||||| ||| ||||| || ||||| Sbjct 500173 CAAGAGATGGTGGTCTTAGATTTGGTGAAATGGAACGAGATTGTATGATATCTCATGGAT 500232 Query 194765 CTACTCAATTCTTAAATGAA 194784 || || || | ||||| ||| Sbjct 500233 CTGCTAAAATGTTAAAAGAA 500252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632488042494360